LINC01601

Summary

LINC01601 (long intergenic non-protein coding RNA 1601, HGNC:51651) is a long non-coding RNA gene on chromosome 18q12.3.

At a glance

• GWAS associations: 1

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51651
Approved symbol	LINC01601
Name	long intergenic non-protein coding RNA 1601
Location	18q12.3
Locus type	RNA, long non-coding
Status	Approved
Entrez	105667213
RNAcentral	URS0000812120 — lncRNA, 955 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000056186 (18:44543508 T>A,C), RS1000112700 (18:44534091 G>A), RS1000213465 (18:44550480 A>C,G), RS1000276582 (18:44542588 G>A), RS1000331690 (18:44537560 C>G), RS1000565908 (18:44550205 T>C), RS1000654754 (18:44541605 G>A), RS1000922141 (18:44553427 C>G), RS1001152757 (18:44548098 A>G), RS1001282406 (18:44543784 C>G,T), RS1001314924 (18:44544000 A>C), RS1001385159 (18:44538189 G>A), RS1001522033 (18:44547852 C>A), RS1001807668 (18:44550639 T>G), RS1001898507 (18:44538471 T>A,C)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

1 associations (top):

Study	Trait	p-value
GCST009066_50	Mosaic loss of chromosome Y (Y chromosome dosage)	3.000000e-23

EFO canonical traits (1, from GWAS)

EFO ID	Trait name
EFO:0007783	mosaic loss of chromosome Y measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.