LINC01607

Summary

LINC01607 (long intergenic non-protein coding RNA 1607, HGNC:51660) is a long non-coding RNA gene on chromosome 8q21.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51660
Approved symbol	LINC01607
Name	long intergenic non-protein coding RNA 1607
Location	8q21.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272138
Ensembl biotype	lncRNA
Entrez	101927067
RNAcentral	URS00007E466B — lncRNA, 626 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000607172, ENST00000607754, ENST00000666705, ENST00000693037, ENST00000845395, ENST00000845396, ENST00000845397, ENST00000845398, ENST00000845399, ENST00000845400, ENST00000845401, ENST00000845402, ENST00000845403, ENST00000845404, ENST00000845405, ENST00000845406, ENST00000845407, ENST00000845408, ENST00000845409

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000607172 — 4 exons

Exon	Start	End
ENSE00003694803	79802487	79802842
ENSE00003696235	79768142	79768218
ENSE00003697804	79777339	79777399
ENSE00003701470	79780008	79780134

Expression profiles

Bgee: expression breadth ubiquitous, 148 present calls, max score 78.04.

FANTOM5 (CAGE): breadth broad, TPM avg 0.5871 / max 12.5491, expressed in 369 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
89514	0.5871	369

Top tissues by expression

241 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.04	gold quality
tibialis anterior	UBERON:0001385	77.83	silver quality
hindlimb stylopod muscle	UBERON:0004252	71.53	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	70.25	gold quality
ventricular zone	UBERON:0003053	69.95	gold quality
cortical plate	UBERON:0005343	69.85	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.18	gold quality
ganglionic eminence	UBERON:0004023	67.79	gold quality
ileal mucosa	UBERON:0000331	67.63	silver quality
adenohypophysis	UBERON:0002196	67.51	gold quality
gastrocnemius	UBERON:0001388	66.23	gold quality
muscle of leg	UBERON:0001383	66.11	gold quality
pancreatic ductal cell	CL:0002079	65.86	silver quality
pituitary gland	UBERON:0000007	65.77	gold quality
body of pancreas	UBERON:0001150	65.09	gold quality
nucleus accumbens	UBERON:0001882	65.08	gold quality
putamen	UBERON:0001874	63.80	gold quality
pancreas	UBERON:0001264	63.69	gold quality
caudate nucleus	UBERON:0001873	63.26	gold quality
islet of Langerhans	UBERON:0000006	62.90	gold quality
hypothalamus	UBERON:0001898	61.71	gold quality
apex of heart	UBERON:0002098	61.18	gold quality
prefrontal cortex	UBERON:0000451	61.03	gold quality
left lobe of thyroid gland	UBERON:0001120	61.02	gold quality
deltoid	UBERON:0001476	61.02	gold quality
minor salivary gland	UBERON:0001830	60.61	gold quality
thyroid gland	UBERON:0002046	60.37	gold quality
right lobe of thyroid gland	UBERON:0001119	60.06	gold quality
amygdala	UBERON:0001876	59.95	gold quality
heart left ventricle	UBERON:0002084	59.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.57

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.