LINC01609

Summary

LINC01609 (long intergenic non-protein coding RNA 1609, HGNC:51663) is a long non-coding RNA gene on chromosome 8q23.2-q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51663
Approved symbol	LINC01609
Name	long intergenic non-protein coding RNA 1609
Location	8q23.2-q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253103
Ensembl biotype	lncRNA
Entrez	101927487
RNAcentral	URS00007E43B4 — lncRNA, 456 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000519506, ENST00000522778, ENST00000653374, ENST00000653400, ENST00000653848, ENST00000654293, ENST00000655136, ENST00000663639, ENST00000669352, ENST00000671497, ENST00000778885, ENST00000778886, ENST00000778887, ENST00000778888, ENST00000778889, ENST00000778890, ENST00000778891, ENST00000778892, ENST00000778893, ENST00000778894

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000519506 — 4 exons

Exon	Start	End
ENSE00002119139	111113432	111113520
ENSE00002128631	111098961	111099139
ENSE00002135027	111116535	111116600
ENSE00002139358	111236082	111236171

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 94.34.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0134 / max 14.8858, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
94443	0.0134	3

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.34	gold quality
uterine cervix	UBERON:0000002	84.22	gold quality
colonic epithelium	UBERON:0000397	84.06	gold quality
muscle tissue	UBERON:0002385	80.59	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.49	gold quality
skeletal muscle tissue	UBERON:0001134	78.46	gold quality
tonsil	UBERON:0002372	78.43	gold quality
testis	UBERON:0000473	76.34	gold quality
bone marrow cell	CL:0002092	75.07	gold quality
left testis	UBERON:0004533	73.87	gold quality
right testis	UBERON:0004534	73.44	gold quality
urinary bladder	UBERON:0001255	71.57	gold quality
myometrium	UBERON:0001296	66.72	gold quality
sural nerve	UBERON:0015488	66.64	silver quality
ventricular zone	UBERON:0003053	66.40	gold quality
liver	UBERON:0002107	65.35	gold quality
cortical plate	UBERON:0005343	64.06	gold quality
ganglionic eminence	UBERON:0004023	63.26	gold quality
blood	UBERON:0000178	58.87	gold quality
kidney	UBERON:0002113	56.82	gold quality
lymph node	UBERON:0000029	55.20	gold quality
monocyte	CL:0000576	55.01	gold quality
adrenal gland	UBERON:0002369	54.81	gold quality
calcaneal tendon	UBERON:0003701	54.13	gold quality
multicellular organism	UBERON:0000468	53.21	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.99	gold quality
endometrium	UBERON:0001295	52.26	silver quality
prefrontal cortex	UBERON:0000451	51.25	gold quality
frontal cortex	UBERON:0001870	50.95	gold quality
adrenal tissue	UBERON:0018303	50.75	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.