LINC01612

Summary

LINC01612 (long intergenic non-protein coding RNA 1612, HGNC:51837) is a long non-coding RNA gene on chromosome 4q33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51837
Approved symbol	LINC01612
Name	long intergenic non-protein coding RNA 1612
Location	4q33
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-789C1.1, TCONS_00008319, linc-GALNTL6-4
Ensembl gene	ENSG00000250266
Ensembl biotype	lncRNA
Entrez	101928223
RNAcentral	URS00007E3F2B — lncRNA, 1260 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000504509, ENST00000654867, ENST00000657650, ENST00000660060, ENST00000665566, ENST00000667527, ENST00000838829, ENST00000838830, ENST00000838831, ENST00000838832, ENST00000838833

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504509 — 4 exons

Exon	Start	End
ENSE00002074740	170276582	170276675
ENSE00003854014	170260099	170260155
ENSE00003862115	170278944	170279103
ENSE00003871504	170282751	170283562

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 84.24.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2144 / max 27.0825, expressed in 92 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
50592	0.2144	92

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.24	gold quality
mucosa of transverse colon	UBERON:0004991	82.56	gold quality
islet of Langerhans	UBERON:0000006	74.92	gold quality
rectum	UBERON:0001052	71.73	gold quality
liver	UBERON:0002107	71.73	gold quality
right lobe of liver	UBERON:0001114	71.57	gold quality
colonic epithelium	UBERON:0000397	71.54	silver quality
endometrium	UBERON:0001295	71.05	gold quality
adult mammalian kidney	UBERON:0000082	66.96	gold quality
transverse colon	UBERON:0001157	66.36	gold quality
colon	UBERON:0001155	64.93	gold quality
kidney	UBERON:0002113	64.79	gold quality
cortical plate	UBERON:0005343	64.00	gold quality
cortex of kidney	UBERON:0001225	63.23	gold quality
intestine	UBERON:0000160	63.04	gold quality
stromal cell of endometrium	CL:0002255	62.97	gold quality
urinary bladder	UBERON:0001255	60.92	gold quality
pancreas	UBERON:0001264	60.80	gold quality
stomach	UBERON:0000945	60.03	gold quality
testis	UBERON:0000473	59.72	gold quality
vermiform appendix	UBERON:0001154	59.67	gold quality
body of stomach	UBERON:0001161	59.61	gold quality
fundus of stomach	UBERON:0001160	59.60	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.47	gold quality
left testis	UBERON:0004533	59.35	gold quality
placenta	UBERON:0001987	59.10	gold quality
right testis	UBERON:0004534	58.90	gold quality
lung	UBERON:0002048	58.52	gold quality
upper lobe of left lung	UBERON:0008952	58.24	gold quality
skin of abdomen	UBERON:0001416	56.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	8.25

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.