LINC01616

Summary

LINC01616 (long intergenic non-protein coding RNA 1616, HGNC:51900) is a long non-coding RNA gene on chromosome 11p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51900
Approved symbol	LINC01616
Name	long intergenic non-protein coding RNA 1616
Location	11p14.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	n341006
Ensembl gene	ENSG00000261340
Ensembl biotype	lncRNA
Entrez	106456574
RNAcentral	URS00008E3A00 — lncRNA, 2279 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000561816

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000561816 — 1 exons

Exon	Start	End
ENSE00002600815	29980113	29982392

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 93.86.

Top tissues by expression

183 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
endothelial cell	CL:0000115	93.86	gold quality
middle temporal gyrus	UBERON:0002771	88.29	gold quality
Brodmann (1909) area 23	UBERON:0013554	87.62	gold quality
nucleus accumbens	UBERON:0001882	80.52	gold quality
parietal pleura	UBERON:0002400	77.96	gold quality
caudate nucleus	UBERON:0001873	77.25	gold quality
lateral nuclear group of thalamus	UBERON:0002736	77.13	gold quality
germinal epithelium of ovary	UBERON:0001304	75.09	gold quality
putamen	UBERON:0001874	74.96	gold quality
primary visual cortex	UBERON:0002436	74.15	gold quality
Brodmann (1909) area 9	UBERON:0013540	72.67	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	72.15	gold quality
superior frontal gyrus	UBERON:0002661	69.74	gold quality
Brodmann (1909) area 46	UBERON:0006483	69.29	gold quality
prefrontal cortex	UBERON:0000451	69.06	gold quality
occipital lobe	UBERON:0002021	68.58	gold quality
cerebral cortex	UBERON:0000956	68.52	gold quality
forebrain	UBERON:0001890	68.50	gold quality
buccal mucosa cell	CL:0002336	68.48	silver quality
neocortex	UBERON:0001950	68.17	gold quality
frontal cortex	UBERON:0001870	68.16	gold quality
anterior cingulate cortex	UBERON:0009835	68.15	gold quality
pons	UBERON:0000988	67.80	gold quality
left adrenal gland cortex	UBERON:0035825	67.73	gold quality
Ammon’s horn	UBERON:0001954	67.54	gold quality
brain	UBERON:0000955	67.44	gold quality
right frontal lobe	UBERON:0002810	67.19	gold quality
left adrenal gland	UBERON:0001234	66.64	gold quality
entorhinal cortex	UBERON:0002728	66.52	gold quality
right adrenal gland cortex	UBERON:0035827	66.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.