LINC01620

Summary

LINC01620 (long intergenic non-protein coding RNA 1620, HGNC:16195) is a long non-coding RNA gene on chromosome 20q13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:16195
Approved symbol	LINC01620
Name	long intergenic non-protein coding RNA 1620
Location	20q13.12
Locus type	RNA, long non-coding
Status	Approved
Aliases	dJ1013A22.3
Ensembl gene	ENSG00000168746
Ensembl biotype	lncRNA
Entrez	140834
RNAcentral	URS00008E39D0 — lncRNA, 753 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000306731, ENST00000372910, ENST00000415299, ENST00000623295, ENST00000637248, ENST00000785467

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000306731 — 3 exons

Exon	Start	End
ENSE00001126551	44462224	44462282
ENSE00001403357	44451984	44452173
ENSE00004161266	44465165	44465375

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 80.27.

Top tissues by expression

221 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	80.27	gold quality
right testis	UBERON:0004534	79.89	gold quality
sural nerve	UBERON:0015488	78.76	silver quality
right lobe of liver	UBERON:0001114	77.00	gold quality
testis	UBERON:0000473	76.77	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.46	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.15	gold quality
liver	UBERON:0002107	65.40	gold quality
sperm	CL:0000019	62.13	gold quality
buccal mucosa cell	CL:0002336	60.46	gold quality
bone marrow	UBERON:0002371	59.06	gold quality
lower lobe of lung	UBERON:0008949	58.80	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	58.78	gold quality
muscle of leg	UBERON:0001383	57.91	gold quality
gastrocnemius	UBERON:0001388	57.56	gold quality
trigeminal ganglion	UBERON:0001675	56.48	gold quality
subthalamic nucleus	UBERON:0001906	56.16	gold quality
substantia nigra pars reticulata	UBERON:0001966	56.08	gold quality
upper leg skin	UBERON:0004262	55.87	silver quality
dorsal root ganglion	UBERON:0000044	55.61	gold quality
inferior vagus X ganglion	UBERON:0005363	55.54	gold quality
dorsal plus ventral thalamus	UBERON:0001897	55.47	gold quality
corpus callosum	UBERON:0002336	55.37	gold quality
saphenous vein	UBERON:0007318	55.37	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	55.35	gold quality
quadriceps femoris	UBERON:0001377	55.26	gold quality
pericardium	UBERON:0002407	55.26	gold quality
layer of synovial tissue	UBERON:0007616	55.20	gold quality
blood	UBERON:0000178	55.19	gold quality
cortex of kidney	UBERON:0001225	55.13	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.