LINC01622

Summary

LINC01622 (long intergenic non-protein coding RNA 1622, HGNC:27768) is a long non-coding RNA gene on chromosome 6p25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27768
Approved symbol	LINC01622
Name	long intergenic non-protein coding RNA 1622
Location	6p25.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00011202
Ensembl gene	ENSG00000286785
Ensembl biotype	lncRNA
Entrez	285768
RNAcentral	URS00007E3D1D — lncRNA, 2354 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000612554, ENST00000655659, ENST00000661526, ENST00000662378, ENST00000663447, ENST00000664781, ENST00000668813, ENST00000669177, ENST00000750028, ENST00000750029, ENST00000750030, ENST00000750031, ENST00000750032, ENST00000750033, ENST00000750034, ENST00000750035, ENST00000750036, ENST00000750037, ENST00000750038, ENST00000750039

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000612554 — 5 exons

Exon	Start	End
ENSE00003731454	962136	962289
ENSE00003864443	1005398	1005528
ENSE00003866812	1099713	1100269
ENSE00003884689	998366	998472
ENSE00003886337	958338	958590

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 85.74.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0176 / max 15.3369, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
71338	0.0176	3

Top tissues by expression

193 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	85.74	silver quality
right testis	UBERON:0004534	76.47	gold quality
left testis	UBERON:0004533	76.26	gold quality
bone marrow cell	CL:0002092	74.95	gold quality
testis	UBERON:0000473	73.78	gold quality
adult mammalian kidney	UBERON:0000082	69.70	gold quality
kidney	UBERON:0002113	63.83	gold quality
metanephros cortex	UBERON:0010533	63.76	gold quality
cortex of kidney	UBERON:0001225	63.75	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.10	gold quality
mucosa of stomach	UBERON:0001199	62.83	gold quality
cortical plate	UBERON:0005343	60.77	silver quality
ganglionic eminence	UBERON:0004023	58.90	gold quality
calcaneal tendon	UBERON:0003701	55.08	gold quality
metanephros	UBERON:0000081	54.68	gold quality
prefrontal cortex	UBERON:0000451	53.53	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	52.55	gold quality
lower esophagus	UBERON:0013473	52.09	gold quality
lower esophagus muscularis layer	UBERON:0035833	52.07	gold quality
right lobe of liver	UBERON:0001114	51.12	gold quality
vermiform appendix	UBERON:0001154	50.91	gold quality
muscle of leg	UBERON:0001383	50.47	gold quality
stomach	UBERON:0000945	49.24	gold quality
lymph node	UBERON:0000029	49.10	gold quality
skin of leg	UBERON:0001511	49.04	gold quality
body of stomach	UBERON:0001161	48.36	gold quality
esophagus	UBERON:0001043	48.24	gold quality
urinary bladder	UBERON:0001255	48.05	gold quality
gastrocnemius	UBERON:0001388	47.78	gold quality
skin of abdomen	UBERON:0001416	47.78	gold quality

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.