LINC01623

Summary

LINC01623 (long intergenic non-protein coding RNA 1623, HGNC:52050) is a long non-coding RNA gene on chromosome 6p22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52050
Approved symbol	LINC01623
Name	long intergenic non-protein coding RNA 1623
Location	6p22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225595
Ensembl biotype	lncRNA
Entrez	401242
RNAcentral	URS0000759DBB — lncRNA, 2785 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000440244, ENST00000606624, ENST00000606727, ENST00000756613

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000440244 — 2 exons

Exon	Start	End
ENSE00001689565	28863284	28863350
ENSE00001783150	28859625	28862015

Expression profiles

Bgee: expression breadth broad, 74 present calls, max score 85.23.

Top tissues by expression

74 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.23	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.52	gold quality
cortical plate	UBERON:0005343	65.04	gold quality
ventricular zone	UBERON:0003053	62.06	gold quality
ganglionic eminence	UBERON:0004023	60.41	gold quality
myometrium	UBERON:0001296	60.07	gold quality
liver	UBERON:0002107	55.01	gold quality
upper lobe of left lung	UBERON:0008952	54.61	gold quality
blood	UBERON:0000178	54.05	gold quality
adult mammalian kidney	UBERON:0000082	53.99	gold quality
monocyte	CL:0000576	53.90	silver quality
bone marrow	UBERON:0002371	51.99	gold quality
prefrontal cortex	UBERON:0000451	51.78	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.04	gold quality
endometrium	UBERON:0001295	50.27	silver quality
lymph node	UBERON:0000029	50.17	silver quality
lung	UBERON:0002048	47.56	gold quality
body of pancreas	UBERON:0001150	47.10	silver quality
fallopian tube	UBERON:0003889	45.98	gold quality
calcaneal tendon	UBERON:0003701	45.64	silver quality
adrenal tissue	UBERON:0018303	45.44	silver quality
cerebral cortex	UBERON:0000956	43.75	gold quality
heart	UBERON:0000948	43.66	silver quality
superior frontal gyrus	UBERON:0002661	43.02	silver quality
right atrium auricular region	UBERON:0006631	42.97	silver quality
brain	UBERON:0000955	42.93	gold quality
tibial artery	UBERON:0007610	42.88	gold quality
gastrocnemius	UBERON:0001388	42.85	silver quality
multicellular organism	UBERON:0000468	42.64	gold quality
tonsil	UBERON:0002372	42.33	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.21

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.