LINC01624

Summary

LINC01624 (long intergenic non-protein coding RNA 1624, HGNC:52051) is a long non-coding RNA gene on chromosome 6q27.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52051
Approved symbol	LINC01624
Name	long intergenic non-protein coding RNA 1624
Location	6q27
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00011425
Ensembl gene	ENSG00000227508
Ensembl biotype	lncRNA
Entrez	401289
RNAcentral	URS000075A461 — lncRNA, 3218 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000422894, ENST00000438622, ENST00000607074, ENST00000809628, ENST00000809629, ENST00000809630, ENST00000809631, ENST00000809632, ENST00000809633, ENST00000809634, ENST00000809635, ENST00000809636, ENST00000809637

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000422894 — 2 exons

Exon	Start	End
ENSE00004205605	170275052	170275430
ENSE00004205611	170279209	170279889

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 93.57.

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
body of pancreas	UBERON:0001150	93.57	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.38	gold quality
pancreas	UBERON:0001264	83.46	gold quality
granulocyte	CL:0000094	73.81	gold quality
leukocyte	CL:0000738	71.90	gold quality
monocyte	CL:0000576	71.62	gold quality
spleen	UBERON:0002106	63.37	gold quality
bone marrow	UBERON:0002371	63.18	gold quality
vermiform appendix	UBERON:0001154	62.28	gold quality
blood	UBERON:0000178	61.87	gold quality
lymph node	UBERON:0000029	61.15	gold quality
tonsil	UBERON:0002372	60.37	gold quality
sural nerve	UBERON:0015488	59.39	silver quality
prefrontal cortex	UBERON:0000451	59.35	gold quality
gall bladder	UBERON:0002110	59.24	gold quality
islet of Langerhans	UBERON:0000006	58.84	gold quality
right coronary artery	UBERON:0001625	58.03	gold quality
rectum	UBERON:0001052	55.99	gold quality
urinary bladder	UBERON:0001255	53.88	gold quality
calcaneal tendon	UBERON:0003701	53.86	gold quality
left uterine tube	UBERON:0001303	52.94	gold quality
multicellular organism	UBERON:0000468	52.00	gold quality
liver	UBERON:0002107	51.92	gold quality
skeletal muscle tissue	UBERON:0001134	51.89	silver quality
right lobe of liver	UBERON:0001114	50.95	gold quality
transverse colon	UBERON:0001157	50.87	gold quality
muscle of leg	UBERON:0001383	50.78	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	50.44	gold quality
colon	UBERON:0001155	50.36	gold quality
corpus callosum	UBERON:0002336	50.33	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	7.75

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.