LINC01625

Summary

LINC01625 (long intergenic non-protein coding RNA 1625, HGNC:52052) is a long non-coding RNA gene on chromosome 6q24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52052
Approved symbol	LINC01625
Name	long intergenic non-protein coding RNA 1625
Location	6q24.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00011139
Ensembl gene	ENSG00000238099
Ensembl biotype	lncRNA
Entrez	645434
RNAcentral	URS000075EB79 — lncRNA, 1690 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000454788, ENST00000654256, ENST00000655740, ENST00000658080, ENST00000664461, ENST00000665194, ENST00000666511, ENST00000668014, ENST00000775742, ENST00000775743, ENST00000775744, ENST00000775745, ENST00000775746, ENST00000775747, ENST00000775748, ENST00000775749, ENST00000775750, ENST00000775751, ENST00000775752, ENST00000775753, ENST00000775754, ENST00000775755, ENST00000775756, ENST00000775757, ENST00000775758, ENST00000775759, ENST00000775760

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000454788 — 4 exons

Exon	Start	End
ENSE00001610350	139472932	139473055
ENSE00001713038	139472527	139472595
ENSE00004142905	139474566	139474661
ENSE00004142910	139468995	139470460

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 78.49.

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.49	gold quality
body of pancreas	UBERON:0001150	76.53	gold quality
colonic epithelium	UBERON:0000397	75.18	gold quality
pancreas	UBERON:0001264	70.63	gold quality
bone marrow cell	CL:0002092	67.56	silver quality
right adrenal gland cortex	UBERON:0035827	67.38	gold quality
right adrenal gland	UBERON:0001233	67.28	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.13	gold quality
liver	UBERON:0002107	67.12	gold quality
left adrenal gland cortex	UBERON:0035825	66.53	gold quality
left adrenal gland	UBERON:0001234	66.44	gold quality
adrenal gland	UBERON:0002369	66.44	gold quality
right lobe of liver	UBERON:0001114	65.14	gold quality
ventricular zone	UBERON:0003053	64.89	gold quality
putamen	UBERON:0001874	64.66	gold quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
caudate nucleus	UBERON:0001873	64.02	gold quality
amygdala	UBERON:0001876	63.69	gold quality
nucleus accumbens	UBERON:0001882	63.69	gold quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
anterior cingulate cortex	UBERON:0009835	62.72	gold quality
ganglionic eminence	UBERON:0004023	61.65	gold quality
prefrontal cortex	UBERON:0000451	61.30	gold quality
right frontal lobe	UBERON:0002810	61.05	gold quality
frontal cortex	UBERON:0001870	60.93	gold quality
cerebral cortex	UBERON:0000956	60.81	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.66	gold quality
calcaneal tendon	UBERON:0003701	60.61	gold quality
ovary	UBERON:0000992	59.93	gold quality
Brodmann (1909) area 9	UBERON:0013540	59.86	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.