LINC01628

Summary

LINC01628 (long intergenic non-protein coding RNA 1628, HGNC:52259) is a long non-coding RNA gene on chromosome 2p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52259
Approved symbol	LINC01628
Name	long intergenic non-protein coding RNA 1628
Location	2p14
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC007403.1
Ensembl gene	ENSG00000232688
Ensembl biotype	lncRNA
Entrez	102724321
RNAcentral	URS000075E412 — lncRNA, 430 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000444266, ENST00000758687, ENST00000758688

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000444266 — 3 exons

Exon	Start	End
ENSE00001608764	66922302	66922482
ENSE00001611139	66922165	66922222
ENSE00001732388	66921510	66921692

Expression profiles

Bgee: expression breadth broad, 41 present calls, max score 67.14.

Top tissues by expression

52 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
caudate nucleus	UBERON:0001873	67.14	gold quality
sural nerve	UBERON:0015488	66.21	silver quality
quadriceps femoris	UBERON:0001377	65.10	gold quality
left testis	UBERON:0004533	64.31	gold quality
right testis	UBERON:0004534	64.28	gold quality
testis	UBERON:0000473	63.97	gold quality
spleen	UBERON:0002106	63.49	silver quality
frontal cortex	UBERON:0001870	63.26	gold quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
gastrocnemius	UBERON:0001388	61.77	gold quality
anterior cingulate cortex	UBERON:0009835	61.58	gold quality
bone marrow	UBERON:0002371	60.89	silver quality
skeletal muscle tissue	UBERON:0001134	60.26	silver quality
spinal cord	UBERON:0002240	60.25	silver quality
thymus	UBERON:0002370	58.37	silver quality
liver	UBERON:0002107	58.08	silver quality
monocyte	CL:0000576	56.75	gold quality
blood	UBERON:0000178	56.39	gold quality
multicellular organism	UBERON:0000468	56.20	gold quality
endometrium	UBERON:0001295	50.63	silver quality
tibial nerve	UBERON:0001323	50.36	silver quality
pancreas	UBERON:0001264	50.33	gold quality
body of pancreas	UBERON:0001150	50.08	gold quality
muscle layer of sigmoid colon	UBERON:0035805	46.73	gold quality
tibial artery	UBERON:0007610	46.65	gold quality
right hemisphere of cerebellum	UBERON:0014890	46.56	gold quality
left ovary	UBERON:0002119	46.44	silver quality
lung	UBERON:0002048	45.99	silver quality
intestine	UBERON:0000160	45.43	gold quality
cerebellar hemisphere	UBERON:0002245	44.62	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.64

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Results show that RP11-397D12.4, AC007403.1, and ERICH1-AS1 LncRNA expression are up-regulated in non-small-cell lung cancer (NSCLC) and may be potential biomarkers for predicting the tumorigenesis of NSCLC in the future. (PMID:26393913)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.