LINC01629

Summary

LINC01629 (long intergenic non-protein coding RNA 1629, HGNC:52260) is a long non-coding RNA gene on chromosome 14q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52260
Approved symbol	LINC01629
Name	long intergenic non-protein coding RNA 1629
Location	14q24.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	linc-KIAA1737-2
Ensembl gene	ENSG00000258602
Ensembl biotype	lncRNA
Entrez	105370578
RNAcentral	URS000030DC47 — lncRNA, 581 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000553613, ENST00000692603, ENST00000793738, ENST00000793739, ENST00000793740, ENST00000793741

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553613 — 3 exons

Exon	Start	End
ENSE00002431500	76965615	76965802
ENSE00002443575	76959638	76959753
ENSE00002479491	76962331	76962607

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 75.30.

FANTOM5 (CAGE): breadth broad, TPM avg 2.0133 / max 177.2784, expressed in 434 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
140745	1.8753	416
140746	0.1380	64

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right atrium auricular region	UBERON:0006631	75.30	gold quality
heart	UBERON:0000948	70.20	gold quality
stromal cell of endometrium	CL:0002255	68.40	gold quality
heart left ventricle	UBERON:0002084	67.72	gold quality
bone marrow cell	CL:0002092	67.30	silver quality
urinary bladder	UBERON:0001255	67.05	gold quality
popliteal artery	UBERON:0002250	64.91	gold quality
tibial artery	UBERON:0007610	64.88	gold quality
blood	UBERON:0000178	64.86	gold quality
smooth muscle tissue	UBERON:0001135	61.51	gold quality
left coronary artery	UBERON:0001626	61.10	gold quality
right ovary	UBERON:0002118	60.74	gold quality
muscle layer of sigmoid colon	UBERON:0035805	60.19	gold quality
myometrium	UBERON:0001296	60.18	gold quality
placenta	UBERON:0001987	59.58	gold quality
vermiform appendix	UBERON:0001154	58.87	gold quality
body of uterus	UBERON:0009853	57.66	gold quality
islet of Langerhans	UBERON:0000006	57.07	gold quality
lower esophagus muscularis layer	UBERON:0035833	56.37	gold quality
lower esophagus	UBERON:0013473	56.35	gold quality
colon	UBERON:0001155	56.22	gold quality
leukocyte	CL:0000738	55.87	gold quality
prostate gland	UBERON:0002367	55.42	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	55.22	gold quality
esophagus	UBERON:0001043	54.15	gold quality
monocyte	CL:0000576	54.10	gold quality
thoracic aorta	UBERON:0001515	54.08	gold quality
ascending aorta	UBERON:0001496	53.77	gold quality
pancreas	UBERON:0001264	53.65	gold quality
endometrium	UBERON:0001295	53.56	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.71

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart disease. (PMID:34112112)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.