LINC01635

Summary

LINC01635 (long intergenic non-protein coding RNA 1635, HGNC:52422) is a long non-coding RNA gene on chromosome 1p36.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52422
Approved symbol	LINC01635
Name	long intergenic non-protein coding RNA 1635
Location	1p36.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228397
Ensembl biotype	lncRNA
Entrez	101928043
RNAcentral	URS000075BDEA — lncRNA, 728 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000455966, ENST00000635097, ENST00000655353, ENST00000655655, ENST00000657670, ENST00000667783, ENST00000774637, ENST00000774638, ENST00000774639, ENST00000774640, ENST00000774641, ENST00000774642, ENST00000774643, ENST00000774644, ENST00000774645, ENST00000774646, ENST00000774647

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455966 — 3 exons

Exon	Start	End
ENSE00001620107	22024806	22024966
ENSE00001645056	22023990	22024445
ENSE00003790832	22025964	22026048

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 86.42.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1793 / max 28.7448, expressed in 76 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
10909	0.1793	76

Top tissues by expression

201 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.42	gold quality
bone marrow cell	CL:0002092	70.93	silver quality
cortical plate	UBERON:0005343	67.08	gold quality
granulocyte	CL:0000094	56.66	gold quality
vermiform appendix	UBERON:0001154	56.16	gold quality
body of pancreas	UBERON:0001150	55.71	gold quality
pancreas	UBERON:0001264	54.54	gold quality
prefrontal cortex	UBERON:0000451	53.49	gold quality
monocyte	CL:0000576	52.67	gold quality
stromal cell of endometrium	CL:0002255	51.76	silver quality
lymph node	UBERON:0000029	51.57	gold quality
islet of Langerhans	UBERON:0000006	50.96	gold quality
gall bladder	UBERON:0002110	49.11	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.05	gold quality
caecum	UBERON:0001153	48.64	gold quality
muscle of leg	UBERON:0001383	48.30	silver quality
oocyte	CL:0000023	47.77	silver quality
gastrocnemius	UBERON:0001388	47.65	silver quality
left adrenal gland cortex	UBERON:0035825	47.15	gold quality
blood	UBERON:0000178	47.02	gold quality
left adrenal gland	UBERON:0001234	46.83	gold quality
heart left ventricle	UBERON:0002084	46.72	gold quality
adult mammalian kidney	UBERON:0000082	46.51	gold quality
cardiac ventricle	UBERON:0002082	46.31	gold quality
right lobe of liver	UBERON:0001114	46.17	silver quality
hindlimb stylopod muscle	UBERON:0004252	45.98	silver quality
adrenal gland	UBERON:0002369	45.84	gold quality
adrenal cortex	UBERON:0001235	45.79	gold quality
bone marrow	UBERON:0002371	45.40	gold quality
heart	UBERON:0000948	45.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.