LINC01639

Summary

LINC01639 (long intergenic non-protein coding RNA 1639, HGNC:52426) is a long non-coding RNA gene on chromosome 22q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52426
Approved symbol	LINC01639
Name	long intergenic non-protein coding RNA 1639
Location	22q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236117
Ensembl biotype	lncRNA
Entrez	105373054
RNAcentral	URS000061B766 — lncRNA, 951 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000450750, ENST00000794692, ENST00000794693, ENST00000794694, ENST00000794695, ENST00000794696, ENST00000794697

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000450750 — 4 exons

Exon	Start	End
ENSE00001640638	43404779	43404882
ENSE00001693229	43402105	43402231
ENSE00004178714	43409086	43409722
ENSE00004178715	43399653	43400454

Expression profiles

Bgee: expression breadth broad, 36 present calls, max score 65.61.

Top tissues by expression

36 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	65.61	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.53	gold quality
cortical plate	UBERON:0005343	63.90	gold quality
liver	UBERON:0002107	63.66	gold quality
ganglionic eminence	UBERON:0004023	59.13	gold quality
prefrontal cortex	UBERON:0000451	55.39	gold quality
monocyte	CL:0000576	55.23	gold quality
sural nerve	UBERON:0015488	53.94	silver quality
blood	UBERON:0000178	53.80	gold quality
frontal cortex	UBERON:0001870	52.69	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.69	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	51.43	gold quality
cerebral cortex	UBERON:0000956	50.81	gold quality
multicellular organism	UBERON:0000468	50.67	gold quality
brain	UBERON:0000955	50.54	gold quality
right frontal lobe	UBERON:0002810	50.16	gold quality
duodenum	UBERON:0002114	49.72	gold quality
left testis	UBERON:0004533	49.09	gold quality
right testis	UBERON:0004534	48.95	gold quality
testis	UBERON:0000473	48.68	gold quality
superior frontal gyrus	UBERON:0002661	48.43	gold quality
cerebellar hemisphere	UBERON:0002245	46.66	gold quality
pituitary gland	UBERON:0000007	45.31	gold quality
caudate nucleus	UBERON:0001873	44.47	silver quality
gastrocnemius	UBERON:0001388	44.21	silver quality
right hemisphere of cerebellum	UBERON:0014890	43.86	gold quality
anterior cingulate cortex	UBERON:0009835	43.51	gold quality
tibial nerve	UBERON:0001323	43.08	silver quality
intestine	UBERON:0000160	42.69	silver quality
Ammon’s horn	UBERON:0001954	41.98	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.