LINC01640

Summary

LINC01640 (long intergenic non-protein coding RNA 1640, HGNC:52427) is a long non-coding RNA gene on chromosome 22q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52427
Approved symbol	LINC01640
Name	long intergenic non-protein coding RNA 1640
Location	22q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231253
Ensembl biotype	lncRNA
Entrez	105373006
RNAcentral	URS0000438058 — lncRNA, 550 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000452505, ENST00000653890, ENST00000659583, ENST00000670696, ENST00000731026, ENST00000731027, ENST00000731028, ENST00000731029

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000452505 — 4 exons

Exon	Start	End
ENSE00001651199	33109103	33109233
ENSE00001719963	33108529	33108625
ENSE00001735296	33110409	33110643
ENSE00001777126	33116208	33116294

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 92.63.

Top tissues by expression

101 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.63	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.81	gold quality
colonic epithelium	UBERON:0000397	65.45	silver quality
sural nerve	UBERON:0015488	65.41	silver quality
bone marrow cell	CL:0002092	64.62	silver quality
skeletal muscle tissue	UBERON:0001134	62.81	gold quality
right uterine tube	UBERON:0001302	58.75	gold quality
cortical plate	UBERON:0005343	57.32	gold quality
tonsil	UBERON:0002372	56.72	silver quality
primary visual cortex	UBERON:0002436	56.03	gold quality
fallopian tube	UBERON:0003889	55.56	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.41	silver quality
blood	UBERON:0000178	54.46	gold quality
calcaneal tendon	UBERON:0003701	53.18	silver quality
prefrontal cortex	UBERON:0000451	51.58	gold quality
muscle of leg	UBERON:0001383	49.87	gold quality
superior frontal gyrus	UBERON:0002661	49.31	gold quality
gastrocnemius	UBERON:0001388	48.86	gold quality
monocyte	CL:0000576	48.83	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	47.53	gold quality
corpus callosum	UBERON:0002336	47.50	silver quality
placenta	UBERON:0001987	47.33	silver quality
tibial artery	UBERON:0007610	46.82	gold quality
popliteal artery	UBERON:0002250	46.79	gold quality
pancreas	UBERON:0001264	46.68	gold quality
rectum	UBERON:0001052	46.53	gold quality
urinary bladder	UBERON:0001255	46.38	gold quality
frontal cortex	UBERON:0001870	46.17	gold quality
islet of Langerhans	UBERON:0000006	46.14	gold quality
heart left ventricle	UBERON:0002084	45.90	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.