LINC01641

Summary

LINC01641 (long intergenic non-protein coding RNA 1641, HGNC:52428) is a long non-coding RNA gene on chromosome 1q42.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52428
Approved symbol	LINC01641
Name	long intergenic non-protein coding RNA 1641
Location	1q42.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234277
Ensembl biotype	lncRNA
Entrez	107985463
RNAcentral	URS00026A2235 — lncRNA, 760 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000436377, ENST00000445817, ENST00000660249, ENST00000766674, ENST00000766675

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436377 — 2 exons

Exon	Start	End
ENSE00001766744	227409765	227409884
ENSE00001799642	227425756	227426057

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 75.32.

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.32	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.36	gold quality
muscle tissue	UBERON:0002385	63.23	silver quality
hindlimb stylopod muscle	UBERON:0004252	61.27	gold quality
endometrium	UBERON:0001295	60.81	gold quality
monocyte	CL:0000576	58.64	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.90	gold quality
islet of Langerhans	UBERON:0000006	56.73	gold quality
prefrontal cortex	UBERON:0000451	55.64	gold quality
blood	UBERON:0000178	54.88	gold quality
ganglionic eminence	UBERON:0004023	54.85	silver quality
cortex of kidney	UBERON:0001225	52.87	gold quality
liver	UBERON:0002107	52.02	silver quality
testis	UBERON:0000473	51.81	gold quality
left testis	UBERON:0004533	51.71	gold quality
kidney	UBERON:0002113	51.55	gold quality
muscle of leg	UBERON:0001383	51.51	gold quality
fundus of stomach	UBERON:0001160	51.25	gold quality
heart left ventricle	UBERON:0002084	50.73	gold quality
urinary bladder	UBERON:0001255	50.31	gold quality
right lobe of liver	UBERON:0001114	50.00	silver quality
right testis	UBERON:0004534	49.49	gold quality
gastrocnemius	UBERON:0001388	49.07	gold quality
heart	UBERON:0000948	48.25	gold quality
primary visual cortex	UBERON:0002436	48.05	silver quality
body of pancreas	UBERON:0001150	48.03	gold quality
left uterine tube	UBERON:0001303	47.82	gold quality
thoracic aorta	UBERON:0001515	46.58	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.10	gold quality
right atrium auricular region	UBERON:0006631	45.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.92

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.