LINC01647

Summary

LINC01647 (long intergenic non-protein coding RNA 1647, HGNC:52434) is a long non-coding RNA gene on chromosome 1p36.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52434
Approved symbol	LINC01647
Name	long intergenic non-protein coding RNA 1647
Location	1p36.22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235643
Ensembl biotype	lncRNA
Entrez	101929181
RNAcentral	URS000075A243 — lncRNA, 1297 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000453135

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000453135 — 3 exons

Exon	Start	End
ENSE00001631201	11611843	11611978
ENSE00001740449	11609468	11610113
ENSE00001748771	11612790	11613358

Expression profiles

Bgee: expression breadth broad, 61 present calls, max score 76.90.

Top tissues by expression

140 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.90	silver quality
buccal mucosa cell	CL:0002336	72.45	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	69.00	gold quality
vena cava	UBERON:0004087	68.55	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.47	gold quality
sperm	CL:0000019	64.85	gold quality
gingival epithelium	UBERON:0001949	63.65	gold quality
bone marrow	UBERON:0002371	62.74	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	62.59	gold quality
coronary artery	UBERON:0001621	62.53	gold quality
gingiva	UBERON:0001828	61.94	gold quality
nasal cavity epithelium	UBERON:0005384	61.85	gold quality
secondary oocyte	CL:0000655	61.52	gold quality
lower lobe of lung	UBERON:0008949	61.12	silver quality
mammary duct	UBERON:0001765	60.74	gold quality
cerebellar vermis	UBERON:0004720	60.64	silver quality
pericardium	UBERON:0002407	60.49	gold quality
cardia of stomach	UBERON:0001162	60.38	gold quality
biceps brachii	UBERON:0001507	60.19	gold quality
fundus of stomach	UBERON:0001160	60.11	gold quality
trachea	UBERON:0003126	60.03	gold quality
pons	UBERON:0000988	60.00	silver quality
superior surface of tongue	UBERON:0007371	59.96	gold quality
synovial joint	UBERON:0002217	59.95	gold quality
quadriceps femoris	UBERON:0001377	59.70	gold quality
vastus lateralis	UBERON:0001379	59.69	gold quality
ventricular zone	UBERON:0003053	59.59	gold quality
ventral tegmental area	UBERON:0002691	59.52	gold quality
penis	UBERON:0000989	59.47	silver quality
medulla oblongata	UBERON:0001896	59.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.