LINC01648

Summary

LINC01648 (long intergenic non-protein coding RNA 1648, HGNC:52435) is a long non-coding RNA gene on chromosome 1p35.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52435
Approved symbol	LINC01648
Name	long intergenic non-protein coding RNA 1648
Location	1p35.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233399
Ensembl biotype	lncRNA
Entrez	101929406
RNAcentral	URS000075A653 — lncRNA, 1533 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000445180

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445180 — 7 exons

Exon	Start	End
ENSE00001614679	30037498	30037612
ENSE00001628181	30025025	30025183
ENSE00001726211	30029290	30029490
ENSE00001746506	30013952	30014509
ENSE00001751712	30036772	30037003
ENSE00001757258	30015244	30015295
ENSE00001773678	30016720	30016921

Expression profiles

Bgee: expression breadth broad, 41 present calls, max score 61.32.

Top tissues by expression

178 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	61.32	silver quality
ganglionic eminence	UBERON:0004023	58.18	silver quality
upper leg skin	UBERON:0004262	54.94	silver quality
skin of hip	UBERON:0001554	54.67	silver quality
monocyte	CL:0000576	54.51	gold quality
small intestine Peyer’s patch	UBERON:0003454	53.11	gold quality
lateral globus pallidus	UBERON:0002476	52.50	gold quality
small intestine	UBERON:0002108	52.16	gold quality
nasal cavity epithelium	UBERON:0005384	50.80	gold quality
prefrontal cortex	UBERON:0000451	50.70	silver quality
oocyte	CL:0000023	49.90	gold quality
muscle of leg	UBERON:0001383	49.67	silver quality
islet of Langerhans	UBERON:0000006	49.11	gold quality
smooth muscle tissue	UBERON:0001135	48.62	gold quality
duodenum	UBERON:0002114	48.09	gold quality
gall bladder	UBERON:0002110	47.57	gold quality
intestine	UBERON:0000160	47.21	gold quality
muscle layer of sigmoid colon	UBERON:0035805	47.19	gold quality
endometrium	UBERON:0001295	46.74	gold quality
buccal mucosa cell	CL:0002336	46.51	gold quality
vermiform appendix	UBERON:0001154	46.43	gold quality
coronary artery	UBERON:0001621	46.40	gold quality
caecum	UBERON:0001153	46.26	gold quality
adult mammalian kidney	UBERON:0000082	45.66	gold quality
uterus	UBERON:0000995	45.36	gold quality
pancreas	UBERON:0001264	45.22	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	44.69	silver quality
transverse colon	UBERON:0001157	44.68	gold quality
deltoid	UBERON:0001476	44.60	gold quality
adrenal gland	UBERON:0002369	44.34	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.