LINC01650

Summary

LINC01650 (long intergenic non-protein coding RNA 1650, HGNC:52437) is a long non-coding RNA gene on chromosome 1p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52437
Approved symbol	LINC01650
Name	long intergenic non-protein coding RNA 1650
Location	1p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230434
Ensembl biotype	lncRNA
Entrez	101928169
RNAcentral	URS0000BC4588 — lncRNA, 455 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000426881, ENST00000427695, ENST00000438093, ENST00000650223, ENST00000664351, ENST00000716983, ENST00000828034

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426881 — 3 exons

Exon	Start	End
ENSE00001735807	95380632	95381000
ENSE00001738414	95356229	95356477
ENSE00004031320	95360681	95360865

Expression profiles

Bgee: expression breadth broad, 34 present calls, max score 69.11.

Top tissues by expression

34 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ovary	UBERON:0000992	69.11	silver quality
left testis	UBERON:0004533	67.35	gold quality
testis	UBERON:0000473	66.39	gold quality
right testis	UBERON:0004534	63.44	gold quality
multicellular organism	UBERON:0000468	61.44	gold quality
blood	UBERON:0000178	57.99	gold quality
gall bladder	UBERON:0002110	54.42	gold quality
prostate gland	UBERON:0002367	50.85	gold quality
heart left ventricle	UBERON:0002084	50.59	gold quality
superior frontal gyrus	UBERON:0002661	49.86	gold quality
monocyte	CL:0000576	48.22	silver quality
gastrocnemius	UBERON:0001388	47.06	gold quality
colon	UBERON:0001155	46.43	gold quality
tibial nerve	UBERON:0001323	45.28	gold quality
ascending aorta	UBERON:0001496	45.00	gold quality
body of pancreas	UBERON:0001150	44.62	silver quality
heart	UBERON:0000948	44.57	silver quality
left adrenal gland	UBERON:0001234	43.73	silver quality
tibial artery	UBERON:0007610	43.35	silver quality
esophagus mucosa	UBERON:0002469	42.91	silver quality
stomach	UBERON:0000945	42.11	silver quality
right atrium auricular region	UBERON:0006631	42.04	silver quality
subcutaneous adipose tissue	UBERON:0002190	41.59	silver quality
skin of leg	UBERON:0001511	40.81	silver quality
body of stomach	UBERON:0001161	39.85	silver quality
muscle layer of sigmoid colon	UBERON:0035805	39.56	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	39.30	silver quality
lower esophagus muscularis layer	UBERON:0035833	38.43	silver quality
vagina	UBERON:0000996	37.52	silver quality
substantia nigra	UBERON:0002038	37.16	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.