LINC01653

Summary

LINC01653 (long intergenic non-protein coding RNA 1653, HGNC:52441) is a long non-coding RNA gene on chromosome 1q41.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52441
Approved symbol	LINC01653
Name	long intergenic non-protein coding RNA 1653
Location	1q41
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232100
Ensembl biotype	lncRNA
Entrez	101929631
RNAcentral	URS000075C098 — lncRNA, 1742 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000456026

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000456026 — 4 exons

Exon	Start	End
ENSE00001673053	218058734	218059140
ENSE00001701504	218043505	218044597
ENSE00001702846	218051155	218051262
ENSE00001706083	218046134	218046253

Expression profiles

Bgee: expression breadth broad, 37 present calls, max score 78.71.

Top tissues by expression

154 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.71	gold quality
buccal mucosa cell	CL:0002336	77.37	gold quality
ganglionic eminence	UBERON:0004023	58.07	silver quality
upper leg skin	UBERON:0004262	57.84	silver quality
skin of hip	UBERON:0001554	57.76	silver quality
hindlimb stylopod muscle	UBERON:0004252	54.52	silver quality
sperm	CL:0000019	52.61	silver quality
monocyte	CL:0000576	51.18	silver quality
tendon of biceps brachii	UBERON:0008188	46.72	gold quality
muscle of leg	UBERON:0001383	46.66	silver quality
vermiform appendix	UBERON:0001154	46.21	gold quality
islet of Langerhans	UBERON:0000006	45.40	silver quality
caecum	UBERON:0001153	44.76	silver quality
gastrocnemius	UBERON:0001388	44.34	silver quality
vastus lateralis	UBERON:0001379	43.86	gold quality
middle temporal gyrus	UBERON:0002771	43.86	gold quality
quadriceps femoris	UBERON:0001377	43.77	gold quality
left coronary artery	UBERON:0001626	43.63	silver quality
tendon	UBERON:0000043	43.40	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
amniotic fluid	UBERON:0000173	42.83	gold quality
inferior vagus X ganglion	UBERON:0005363	42.83	gold quality
right frontal lobe	UBERON:0002810	42.82	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
upper lobe of lung	UBERON:0008948	42.12	silver quality
skin of abdomen	UBERON:0001416	42.01	silver quality
heart left ventricle	UBERON:0002084	41.81	gold quality
placenta	UBERON:0001987	41.74	gold quality
pigmented layer of retina	UBERON:0001782	41.70	gold quality
superior vestibular nucleus	UBERON:0007227	41.38	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.