LINC01654

Summary

LINC01654 (long intergenic non-protein coding RNA 1654, HGNC:52442) is a long non-coding RNA gene on chromosome 1p36.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52442
Approved symbol	LINC01654
Name	long intergenic non-protein coding RNA 1654
Location	1p36.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261781
Ensembl biotype	lncRNA
Entrez	101927876
RNAcentral	URS00007E4488 — lncRNA, 2484 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000569711

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000569711 — 3 exons

Exon	Start	End
ENSE00002580145	18068192	18068278
ENSE00002596002	18072220	18074412
ENSE00002609651	18065657	18065847

Expression profiles

Bgee: expression breadth broad, 18 present calls, max score 51.05.

Top tissues by expression

18 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
prefrontal cortex	UBERON:0000451	51.05	gold quality
frontal cortex	UBERON:0001870	47.39	gold quality
Ammon’s horn	UBERON:0001954	45.30	gold quality
cerebral cortex	UBERON:0000956	45.21	silver quality
superior frontal gyrus	UBERON:0002661	44.78	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.22	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	43.04	silver quality
cerebellar cortex	UBERON:0002129	41.51	silver quality
right frontal lobe	UBERON:0002810	41.11	silver quality
cerebellar hemisphere	UBERON:0002245	41.00	silver quality
right hemisphere of cerebellum	UBERON:0014890	40.13	silver quality
anterior cingulate cortex	UBERON:0009835	39.83	silver quality
hypothalamus	UBERON:0001898	36.20	silver quality
caudate nucleus	UBERON:0001873	35.80	silver quality
substantia nigra	UBERON:0002038	34.98	silver quality
left testis	UBERON:0004533	29.75	silver quality
testis	UBERON:0000473	29.50	silver quality
right testis	UBERON:0004534	27.41	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.