LINC01670

Summary

LINC01670 (long intergenic non-protein coding RNA 1670, HGNC:52458) is a long non-coding RNA gene on chromosome 21p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52458
Approved symbol	LINC01670
Name	long intergenic non-protein coding RNA 1670
Location	21p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000279094
Ensembl biotype	lncRNA
Entrez	105379487
RNAcentral	URS0002A620A9 — lncRNA, 1324 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000623227, ENST00000624261, ENST00000624859, ENST00000743697, ENST00000743698, ENST00000743699, ENST00000743700, ENST00000743701, ENST00000743702, ENST00000743703, ENST00000743704

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000623227 — 2 exons

Exon	Start	End
ENSE00004082320	5502369	5502603
ENSE00004082321	5499013	5500101

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 89.28.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	89.28	gold quality
ganglionic eminence	UBERON:0004023	87.78	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.42	gold quality
body of pancreas	UBERON:0001150	78.06	gold quality
rectum	UBERON:0001052	77.31	gold quality
bone marrow	UBERON:0002371	77.31	gold quality
pancreas	UBERON:0001264	77.12	gold quality
stromal cell of endometrium	CL:0002255	77.02	gold quality
right ovary	UBERON:0002118	76.11	gold quality
left ovary	UBERON:0002119	75.85	gold quality
islet of Langerhans	UBERON:0000006	75.59	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	75.35	gold quality
ovary	UBERON:0000992	75.30	gold quality
mucosa of stomach	UBERON:0001199	74.65	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	74.65	gold quality
prostate gland	UBERON:0002367	74.61	gold quality
subcutaneous adipose tissue	UBERON:0002190	74.43	gold quality
adrenal tissue	UBERON:0018303	74.13	gold quality
thoracic mammary gland	UBERON:0005200	74.07	gold quality
skin of abdomen	UBERON:0001416	73.62	gold quality
zone of skin	UBERON:0000014	73.43	gold quality
skin of leg	UBERON:0001511	73.43	gold quality
muscle of leg	UBERON:0001383	73.20	gold quality
gastrocnemius	UBERON:0001388	73.16	gold quality
stomach	UBERON:0000945	73.02	gold quality
fundus of stomach	UBERON:0001160	73.01	gold quality
saliva-secreting gland	UBERON:0001044	72.91	gold quality
minor salivary gland	UBERON:0001830	72.63	gold quality
body of stomach	UBERON:0001161	72.43	gold quality
lymph node	UBERON:0000029	72.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.