LINC01673

Summary

LINC01673 (long intergenic non-protein coding RNA 1673, HGNC:52461) is a long non-coding RNA gene on chromosome 21q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52461
Approved symbol	LINC01673
Name	long intergenic non-protein coding RNA 1673
Location	21q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234052
Ensembl biotype	lncRNA
Entrez	105372763
RNAcentral	URS00026A1F51 — lncRNA, 1051 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000426418, ENST00000657236, ENST00000660773, ENST00000662686, ENST00000668267, ENST00000764722

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426418 — 3 exons

Exon	Start	End
ENSE00001624269	27653356	27654015
ENSE00001673440	27648665	27648765
ENSE00003887019	27638613	27638923

Expression profiles

Bgee: expression breadth broad, 59 present calls, max score 94.00.

Top tissues by expression

59 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.00	gold quality
calcaneal tendon	UBERON:0003701	65.71	gold quality
skeletal muscle tissue	UBERON:0001134	65.01	silver quality
left testis	UBERON:0004533	61.00	gold quality
testis	UBERON:0000473	60.98	gold quality
right testis	UBERON:0004534	59.56	gold quality
stromal cell of endometrium	CL:0002255	56.13	gold quality
urinary bladder	UBERON:0001255	53.75	silver quality
muscle of leg	UBERON:0001383	53.66	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	53.63	gold quality
blood	UBERON:0000178	51.83	silver quality
thoracic mammary gland	UBERON:0005200	51.47	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.38	gold quality
multicellular organism	UBERON:0000468	50.24	gold quality
myometrium	UBERON:0001296	49.91	gold quality
placenta	UBERON:0001987	49.52	gold quality
upper lobe of left lung	UBERON:0008952	48.39	gold quality
stomach	UBERON:0000945	47.92	gold quality
left lobe of thyroid gland	UBERON:0001120	47.80	gold quality
islet of Langerhans	UBERON:0000006	47.37	gold quality
monocyte	CL:0000576	47.21	silver quality
adult mammalian kidney	UBERON:0000082	47.19	silver quality
vagina	UBERON:0000996	46.84	gold quality
gastrocnemius	UBERON:0001388	46.74	gold quality
corpus callosum	UBERON:0002336	46.65	silver quality
body of pancreas	UBERON:0001150	46.12	silver quality
kidney	UBERON:0002113	45.90	silver quality
heart	UBERON:0000948	45.69	silver quality
brain	UBERON:0000955	44.37	silver quality
left coronary artery	UBERON:0001626	44.04	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.