LINC01676

Summary

LINC01676 (long intergenic non-protein coding RNA 1676, HGNC:52464) is a long non-coding RNA gene on chromosome 1p21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52464
Approved symbol	LINC01676
Name	long intergenic non-protein coding RNA 1676
Location	1p21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230768
Ensembl biotype	lncRNA
Entrez	101928476
RNAcentral	URS00007E44BA — lncRNA, 1831 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000420901, ENST00000435253, ENST00000594455, ENST00000595309, ENST00000597635, ENST00000597752, ENST00000600656, ENST00000610126, ENST00000623043, ENST00000623447, ENST00000624083, ENST00000624229, ENST00000624489, ENST00000624780, ENST00000624898, ENST00000652819, ENST00000654698, ENST00000657035, ENST00000659994, ENST00000661746, ENST00000669135, ENST00000669362, ENST00000815621

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420901 — 4 exons

Exon	Start	End
ENSE00001594384	105605935	105606089
ENSE00001625857	105604163	105604265
ENSE00001738980	105618859	105618918
ENSE00001804696	105589694	105589785

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 90.84.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0085 / max 8.1195, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
13596	0.0085	4

Top tissues by expression

181 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	90.84	gold quality
right testis	UBERON:0004534	89.00	gold quality
testis	UBERON:0000473	86.32	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.14	gold quality
bone marrow cell	CL:0002092	76.66	gold quality
sural nerve	UBERON:0015488	69.06	gold quality
sperm	CL:0000019	65.93	silver quality
oocyte	CL:0000023	65.07	gold quality
right lobe of thyroid gland	UBERON:0001119	62.95	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.15	silver quality
lower lobe of lung	UBERON:0008949	58.61	gold quality
mucosa of paranasal sinus	UBERON:0005030	56.80	gold quality
ventral tegmental area	UBERON:0002691	56.67	silver quality
pericardium	UBERON:0002407	55.01	gold quality
monocyte	CL:0000576	54.99	gold quality
epithelium of nasopharynx	UBERON:0001951	54.92	gold quality
corpus callosum	UBERON:0002336	54.28	silver quality
mammary duct	UBERON:0001765	53.31	gold quality
caecum	UBERON:0001153	52.70	gold quality
germinal epithelium of ovary	UBERON:0001304	51.25	gold quality
skin of hip	UBERON:0001554	51.18	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.04	gold quality
vermiform appendix	UBERON:0001154	50.72	gold quality
smooth muscle tissue	UBERON:0001135	49.78	gold quality
gastrocnemius	UBERON:0001388	49.78	gold quality
gall bladder	UBERON:0002110	49.48	silver quality
islet of Langerhans	UBERON:0000006	49.26	gold quality
right lobe of liver	UBERON:0001114	49.00	silver quality
lymph node	UBERON:0000029	48.94	silver quality
upper lobe of lung	UBERON:0008948	48.58	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.06

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.