LINC01680

Summary

LINC01680 (long intergenic non-protein coding RNA 1680, HGNC:52467) is a long non-coding RNA gene on chromosome 1q31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52467
Approved symbol	LINC01680
Name	long intergenic non-protein coding RNA 1680
Location	1q31.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233882
Ensembl biotype	lncRNA
Entrez	105371660
RNAcentral	URS0000BC462A — lncRNA, 344 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000434983, ENST00000738332, ENST00000738333

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434983 — 2 exons

Exon	Start	End
ENSE00001670220	191221159	191221312
ENSE00004073454	191228323	191228557

Expression profiles

Bgee: expression breadth broad, 22 present calls, max score 93.18.

Top tissues by expression

22 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.18	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.93	gold quality
blood	UBERON:0000178	66.24	gold quality
monocyte	CL:0000576	59.81	gold quality
body of pancreas	UBERON:0001150	57.95	gold quality
calcaneal tendon	UBERON:0003701	57.01	gold quality
lung	UBERON:0002048	56.64	gold quality
frontal cortex	UBERON:0001870	51.51	gold quality
left testis	UBERON:0004533	50.13	gold quality
testis	UBERON:0000473	49.89	gold quality
gastrocnemius	UBERON:0001388	49.61	gold quality
corpus callosum	UBERON:0002336	49.36	silver quality
adrenal tissue	UBERON:0018303	49.00	gold quality
prostate gland	UBERON:0002367	48.22	gold quality
right testis	UBERON:0004534	48.16	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.96	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	46.85	gold quality
right frontal lobe	UBERON:0002810	46.51	gold quality
caudate nucleus	UBERON:0001873	45.33	gold quality
skin of leg	UBERON:0001511	44.80	gold quality
stomach	UBERON:0000945	44.50	gold quality
thoracic mammary gland	UBERON:0005200	35.10	silver quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-HCAD-30	no	81.04
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.