LINC01682

Summary

LINC01682 (long intergenic non-protein coding RNA 1682, HGNC:52470) is a long non-coding RNA gene on chromosome 1q42.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52470
Approved symbol	LINC01682
Name	long intergenic non-protein coding RNA 1682
Location	1q42.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227043
Ensembl biotype	lncRNA
Entrez	101927504
RNAcentral	URS0000BC449B — lncRNA, 666 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000435973, ENST00000650825, ENST00000661713, ENST00000669450, ENST00000669533, ENST00000806793, ENST00000806794, ENST00000806795, ENST00000806796, ENST00000806797, ENST00000806798, ENST00000806799, ENST00000806800, ENST00000806801, ENST00000806802, ENST00000806803, ENST00000806804, ENST00000806805, ENST00000806806, ENST00000806807, ENST00000806808, ENST00000806809, ENST00000807772, ENST00000807773

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000435973 — 3 exons

Exon	Start	End
ENSE00001764834	229885540	229885818
ENSE00004200209	229891966	229892086
ENSE00004200214	229875543	229875721

Expression profiles

Bgee: expression breadth broad, 61 present calls, max score 91.88.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0121 / max 11.2771, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
17927	0.0121	3

Top tissues by expression

61 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.88	gold quality
left testis	UBERON:0004533	82.35	gold quality
testis	UBERON:0000473	81.74	gold quality
right testis	UBERON:0004534	81.61	gold quality
multicellular organism	UBERON:0000468	63.33	gold quality
skeletal muscle tissue	UBERON:0001134	59.29	gold quality
skin of leg	UBERON:0001511	53.16	gold quality
blood	UBERON:0000178	53.07	gold quality
right hemisphere of cerebellum	UBERON:0014890	51.70	gold quality
right lobe of liver	UBERON:0001114	51.37	gold quality
monocyte	CL:0000576	50.55	silver quality
muscle of leg	UBERON:0001383	50.02	gold quality
gastrocnemius	UBERON:0001388	49.56	gold quality
prostate gland	UBERON:0002367	49.21	gold quality
prefrontal cortex	UBERON:0000451	49.17	gold quality
left ovary	UBERON:0002119	47.93	silver quality
body of pancreas	UBERON:0001150	47.60	gold quality
ovary	UBERON:0000992	47.38	silver quality
cerebellar hemisphere	UBERON:0002245	47.15	gold quality
tibial artery	UBERON:0007610	45.94	gold quality
endometrium	UBERON:0001295	45.49	silver quality
body of uterus	UBERON:0009853	44.51	gold quality
vermiform appendix	UBERON:0001154	44.30	silver quality
stomach	UBERON:0000945	44.23	gold quality
body of stomach	UBERON:0001161	43.88	gold quality
left coronary artery	UBERON:0001626	43.34	gold quality
tibial nerve	UBERON:0001323	43.04	gold quality
right atrium auricular region	UBERON:0006631	42.49	silver quality
esophagus mucosa	UBERON:0002469	41.48	silver quality
hypothalamus	UBERON:0001898	41.15	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.