LINC01683

Summary

LINC01683 (long intergenic non-protein coding RNA 1683, HGNC:52471) is a long non-coding RNA gene on chromosome 21q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52471
Approved symbol	LINC01683
Name	long intergenic non-protein coding RNA 1683
Location	21q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233480
Ensembl biotype	lncRNA
Entrez	105372746
RNAcentral	URS00002365E8 — lncRNA, 412 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000443479, ENST00000652251, ENST00000718802

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000443479 — 3 exons

Exon	Start	End
ENSE00001677715	19898023	19898084
ENSE00004035931	19893098	19893573
ENSE00004035932	19899701	19899814

Expression profiles

Bgee: expression breadth broad, 44 present calls, max score 84.05.

Top tissues by expression

44 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.05	gold quality
endometrium	UBERON:0001295	64.89	gold quality
tonsil	UBERON:0002372	60.60	silver quality
ganglionic eminence	UBERON:0004023	58.59	gold quality
leukocyte	CL:0000738	57.40	gold quality
monocyte	CL:0000576	55.87	gold quality
blood	UBERON:0000178	54.22	gold quality
prefrontal cortex	UBERON:0000451	53.89	gold quality
cerebellar hemisphere	UBERON:0002245	53.23	gold quality
lymph node	UBERON:0000029	51.95	gold quality
caudate nucleus	UBERON:0001873	49.76	silver quality
lung	UBERON:0002048	48.27	silver quality
tibial nerve	UBERON:0001323	48.22	silver quality
islet of Langerhans	UBERON:0000006	47.71	silver quality
putamen	UBERON:0001874	46.98	silver quality
tibial artery	UBERON:0007610	46.26	gold quality
body of uterus	UBERON:0009853	45.25	gold quality
gastrocnemius	UBERON:0001388	44.34	silver quality
body of pancreas	UBERON:0001150	44.27	silver quality
body of stomach	UBERON:0001161	43.87	gold quality
superior frontal gyrus	UBERON:0002661	43.51	silver quality
subcutaneous adipose tissue	UBERON:0002190	43.36	silver quality
substantia nigra	UBERON:0002038	43.31	silver quality
anterior cingulate cortex	UBERON:0009835	42.66	silver quality
omental fat pad	UBERON:0010414	42.32	silver quality
heart left ventricle	UBERON:0002084	42.01	silver quality
amygdala	UBERON:0001876	41.40	silver quality
ascending aorta	UBERON:0001496	41.06	silver quality
muscle layer of sigmoid colon	UBERON:0035805	41.02	silver quality
skin of abdomen	UBERON:0001416	40.56	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.