LINC01685

Summary

LINC01685 (long intergenic non-protein coding RNA 1685, HGNC:52473) is a long non-coding RNA gene on chromosome 1p34.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52473
Approved symbol	LINC01685
Name	long intergenic non-protein coding RNA 1685
Location	1p34.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238063
Ensembl biotype	lncRNA
Entrez	105378656
RNAcentral	URS0000BC4494 — lncRNA, 806 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000452971, ENST00000634298, ENST00000634464, ENST00000634732, ENST00000654266, ENST00000658172, ENST00000658241, ENST00000658281, ENST00000658664, ENST00000658751, ENST00000658851, ENST00000658982, ENST00000659619, ENST00000660113, ENST00000665359, ENST00000671197, ENST00000779449

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000452971 — 3 exons

Exon	Start	End
ENSE00001615819	38476387	38476484
ENSE00001620826	38476193	38476255
ENSE00001803402	38474842	38475824

Expression profiles

Bgee: expression breadth broad, 52 present calls, max score 86.33.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0535 / max 26.2662, expressed in 14 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
2245	0.0535	14

Top tissues by expression

52 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.33	silver quality
bone marrow cell	CL:0002092	71.81	silver quality
muscle tissue	UBERON:0002385	66.10	gold quality
bone marrow	UBERON:0002371	62.71	gold quality
tonsil	UBERON:0002372	58.93	gold quality
ganglionic eminence	UBERON:0004023	56.67	gold quality
left testis	UBERON:0004533	56.08	gold quality
testis	UBERON:0000473	56.03	gold quality
right testis	UBERON:0004534	55.83	gold quality
lymph node	UBERON:0000029	54.14	gold quality
monocyte	CL:0000576	52.20	silver quality
adrenal gland	UBERON:0002369	51.80	gold quality
blood	UBERON:0000178	51.56	gold quality
multicellular organism	UBERON:0000468	51.20	gold quality
vermiform appendix	UBERON:0001154	51.02	gold quality
prefrontal cortex	UBERON:0000451	50.55	silver quality
anterior cingulate cortex	UBERON:0009835	50.02	gold quality
spleen	UBERON:0002106	49.70	gold quality
heart left ventricle	UBERON:0002084	48.97	gold quality
duodenum	UBERON:0002114	48.13	silver quality
islet of Langerhans	UBERON:0000006	47.87	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	47.24	silver quality
right atrium auricular region	UBERON:0006631	46.67	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.20	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	46.09	gold quality
omental fat pad	UBERON:0010414	45.88	gold quality
small intestine	UBERON:0002108	45.64	gold quality
small intestine Peyer’s patch	UBERON:0003454	45.54	gold quality
gall bladder	UBERON:0002110	44.93	silver quality
kidney	UBERON:0002113	44.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.