LINC01688

Summary

LINC01688 (long intergenic non-protein coding RNA 1688, HGNC:52475) is a long non-coding RNA gene on chromosome 1q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52475
Approved symbol	LINC01688
Name	long intergenic non-protein coding RNA 1688
Location	1q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227181
Ensembl biotype	lncRNA
Entrez	105371644
RNAcentral	URS0000BC452B — lncRNA, 279 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000435492, ENST00000754565

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000435492 — 2 exons

Exon	Start	End
ENSE00004102710	182712643	182712888
ENSE00004102711	182714313	182714547

Expression profiles

Bgee: expression breadth broad, 41 present calls, max score 98.88.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0104 / max 9.4728, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
7044	0.0104	3

Top tissues by expression

41 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.88	gold quality
left testis	UBERON:0004533	80.07	gold quality
testis	UBERON:0000473	79.75	gold quality
right testis	UBERON:0004534	79.45	gold quality
multicellular organism	UBERON:0000468	69.39	gold quality
gastrocnemius	UBERON:0001388	69.24	gold quality
monocyte	CL:0000576	63.72	gold quality
blood	UBERON:0000178	62.44	gold quality
islet of Langerhans	UBERON:0000006	60.61	gold quality
right lobe of liver	UBERON:0001114	57.45	gold quality
smooth muscle tissue	UBERON:0001135	56.50	gold quality
amygdala	UBERON:0001876	55.69	gold quality
muscle layer of sigmoid colon	UBERON:0035805	55.16	gold quality
ascending aorta	UBERON:0001496	53.60	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	52.11	gold quality
heart left ventricle	UBERON:0002084	51.75	gold quality
prostate gland	UBERON:0002367	51.41	gold quality
omental fat pad	UBERON:0010414	51.35	gold quality
lower esophagus muscularis layer	UBERON:0035833	51.14	gold quality
ovary	UBERON:0000992	51.11	gold quality
left ovary	UBERON:0002119	50.73	gold quality
skin of abdomen	UBERON:0001416	50.47	gold quality
body of stomach	UBERON:0001161	50.01	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.54	gold quality
left uterine tube	UBERON:0001303	49.14	gold quality
skin of leg	UBERON:0001511	49.08	gold quality
subcutaneous adipose tissue	UBERON:0002190	48.99	gold quality
right atrium auricular region	UBERON:0006631	48.87	gold quality
tibial nerve	UBERON:0001323	48.82	gold quality
anterior cingulate cortex	UBERON:0009835	48.62	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.