LINC01690

Summary

LINC01690 (long intergenic non-protein coding RNA 1690, HGNC:52477) is a long non-coding RNA gene on chromosome 21q22.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52477
Approved symbol	LINC01690
Name	long intergenic non-protein coding RNA 1690
Location	21q22.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228961
Ensembl biotype	lncRNA
Entrez	102724502
RNAcentral	URS0000A76FE9 — lncRNA, 587 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000424837, ENST00000778345

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424837 — 2 exons

Exon	Start	End
ENSE00001673622	32960193	32960566
ENSE00004147706	32958807	32959089

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 82.63.

Top tissues by expression

101 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar vermis	UBERON:0004720	82.63	gold quality
quadriceps femoris	UBERON:0001377	81.33	gold quality
skeletal muscle tissue	UBERON:0001134	65.76	silver quality
thymus	UBERON:0002370	62.84	silver quality
bone marrow cell	CL:0002092	61.54	silver quality
right testis	UBERON:0004534	57.76	gold quality
left testis	UBERON:0004533	57.13	gold quality
testis	UBERON:0000473	56.82	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	55.62	gold quality
primary visual cortex	UBERON:0002436	54.60	gold quality
prefrontal cortex	UBERON:0000451	53.91	gold quality
calcaneal tendon	UBERON:0003701	53.55	silver quality
islet of Langerhans	UBERON:0000006	53.36	gold quality
monocyte	CL:0000576	52.11	gold quality
pancreas	UBERON:0001264	50.75	gold quality
lymph node	UBERON:0000029	50.55	gold quality
blood	UBERON:0000178	50.12	silver quality
gall bladder	UBERON:0002110	49.30	gold quality
urinary bladder	UBERON:0001255	49.15	gold quality
corpus callosum	UBERON:0002336	48.76	silver quality
endocervix	UBERON:0000458	48.38	gold quality
superior frontal gyrus	UBERON:0002661	47.97	silver quality
muscle of leg	UBERON:0001383	47.75	silver quality
endometrium	UBERON:0001295	47.65	gold quality
left uterine tube	UBERON:0001303	47.10	gold quality
frontal cortex	UBERON:0001870	46.64	gold quality
cerebellar cortex	UBERON:0002129	46.35	silver quality
gastrocnemius	UBERON:0001388	46.23	silver quality
adult mammalian kidney	UBERON:0000082	46.22	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.