LINC01696

Summary

LINC01696 (long intergenic non-protein coding RNA 1696, HGNC:52484) is a long non-coding RNA gene on chromosome 1q32.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52484
Approved symbol	LINC01696
Name	long intergenic non-protein coding RNA 1696
Location	1q32.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227940
Ensembl biotype	lncRNA
Entrez	105372897
RNAcentral	URS0000A77240 — lncRNA, 506 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000448988, ENST00000658311, ENST00000665245, ENST00000808194, ENST00000808195, ENST00000808196, ENST00000808197

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000448988 — 3 exons

Exon	Start	End
ENSE00001619221	209327348	209327472
ENSE00004202896	209328288	209328535
ENSE00004202901	209325412	209325580

Expression profiles

Bgee: expression breadth broad, 26 present calls, max score 63.40.

Top tissues by expression

26 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	63.40	gold quality
right testis	UBERON:0004534	63.02	gold quality
testis	UBERON:0000473	62.95	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.48	gold quality
monocyte	CL:0000576	55.07	gold quality
blood	UBERON:0000178	52.76	gold quality
gastrocnemius	UBERON:0001388	50.17	gold quality
amygdala	UBERON:0001876	50.16	gold quality
calcaneal tendon	UBERON:0003701	48.50	silver quality
cortex of kidney	UBERON:0001225	47.83	silver quality
body of pancreas	UBERON:0001150	44.33	silver quality
skin of leg	UBERON:0001511	43.88	gold quality
muscle layer of sigmoid colon	UBERON:0035805	43.29	silver quality
fallopian tube	UBERON:0003889	43.08	gold quality
lower esophagus muscularis layer	UBERON:0035833	41.41	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	40.86	silver quality
tibial nerve	UBERON:0001323	39.44	gold quality
esophagus mucosa	UBERON:0002469	38.91	silver quality
left lobe of thyroid gland	UBERON:0001120	38.78	silver quality
minor salivary gland	UBERON:0001830	38.42	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	37.48	silver quality
right atrium auricular region	UBERON:0006631	37.24	silver quality
transverse colon	UBERON:0001157	36.67	silver quality
omental fat pad	UBERON:0010414	36.35	silver quality
hypothalamus	UBERON:0001898	36.29	silver quality
anterior cingulate cortex	UBERON:0009835	35.38	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.