LINC01697

Summary

LINC01697 (long intergenic non-protein coding RNA 1697, HGNC:52485) is a long non-coding RNA gene on chromosome 21q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52485
Approved symbol	LINC01697
Name	long intergenic non-protein coding RNA 1697
Location	21q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232079
Ensembl biotype	lncRNA
Entrez	284825
RNAcentral	URS00007E48F7 — lncRNA, 1752 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 8 lncRNA, 1 retained_intron

ENST00000423808, ENST00000426534, ENST00000436878, ENST00000458316, ENST00000609782, ENST00000616647, ENST00000631186, ENST00000657256, ENST00000763451

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423808 — 2 exons

Exon	Start	End
ENSE00004119567	28102550	28102867
ENSE00004119571	28089889	28090521

Expression profiles

Bgee: expression breadth ubiquitous, 183 present calls, max score 84.99.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2218 / max 18.6775, expressed in 91 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
209290	0.1635	63
188706	0.0583	29

Top tissues by expression

246 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pericardium	UBERON:0002407	84.99	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.59	gold quality
kidney epithelium	UBERON:0004819	81.45	gold quality
tibialis anterior	UBERON:0001385	81.20	silver quality
adipose tissue	UBERON:0001013	79.74	gold quality
adult mammalian kidney	UBERON:0000082	79.62	gold quality
adipose tissue of abdominal region	UBERON:0007808	78.89	gold quality
omental fat pad	UBERON:0010414	78.78	gold quality
peritoneum	UBERON:0002358	78.68	gold quality
subcutaneous adipose tissue	UBERON:0002190	76.81	gold quality
kidney	UBERON:0002113	76.28	gold quality
cortex of kidney	UBERON:0001225	76.01	gold quality
sural nerve	UBERON:0015488	74.59	gold quality
pancreatic ductal cell	CL:0002079	74.35	gold quality
gall bladder	UBERON:0002110	74.35	gold quality
mucosa of stomach	UBERON:0001199	74.33	gold quality
hindlimb stylopod muscle	UBERON:0004252	74.29	gold quality
buccal mucosa cell	CL:0002336	73.87	gold quality
calcaneal tendon	UBERON:0003701	73.08	gold quality
left uterine tube	UBERON:0001303	72.74	gold quality
muscle of leg	UBERON:0001383	72.43	gold quality
descending thoracic aorta	UBERON:0002345	72.18	gold quality
colonic epithelium	UBERON:0000397	71.83	gold quality
metanephros cortex	UBERON:0010533	71.76	gold quality
gastrocnemius	UBERON:0001388	71.50	gold quality
deltoid	UBERON:0001476	70.69	silver quality
oral cavity	UBERON:0000167	69.99	gold quality
palpebral conjunctiva	UBERON:0001812	69.80	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	69.59	gold quality
jejunal mucosa	UBERON:0000399	69.45	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	12.87

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.