LINC01698

Summary

LINC01698 (long intergenic non-protein coding RNA 1698, HGNC:52486) is a long non-coding RNA gene on chromosome 1q32.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52486
Approved symbol	LINC01698
Name	long intergenic non-protein coding RNA 1698
Location	1q32.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231648
Ensembl biotype	lncRNA
Entrez	101929476
RNAcentral	URS0000BC43D7 — lncRNA, 596 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000443636, ENST00000447257, ENST00000655463, ENST00000657739, ENST00000771333

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000443636 — 5 exons

Exon	Start	End
ENSE00001637064	209379427	209379690
ENSE00001649529	209373394	209373554
ENSE00001693311	209367662	209367784
ENSE00001715807	209367889	209368012
ENSE00001796477	209368415	209368469

Expression profiles

Bgee: expression breadth broad, 63 present calls, max score 95.68.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0412 / max 39.1412, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
8291	0.0412	4

Top tissues by expression

63 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	95.68	gold quality
skin of abdomen	UBERON:0001416	74.79	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.15	gold quality
zone of skin	UBERON:0000014	72.24	gold quality
skin of leg	UBERON:0001511	70.16	gold quality
adrenal gland	UBERON:0002369	62.60	gold quality
pancreas	UBERON:0001264	60.90	gold quality
multicellular organism	UBERON:0000468	60.04	gold quality
right lobe of liver	UBERON:0001114	59.29	gold quality
monocyte	CL:0000576	57.46	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.46	gold quality
lung	UBERON:0002048	53.03	gold quality
thyroid gland	UBERON:0002046	52.92	gold quality
thoracic aorta	UBERON:0001515	52.25	gold quality
left coronary artery	UBERON:0001626	52.15	gold quality
blood	UBERON:0000178	51.96	silver quality
testis	UBERON:0000473	51.78	gold quality
ascending aorta	UBERON:0001496	51.35	gold quality
adult mammalian kidney	UBERON:0000082	51.04	gold quality
ectocervix	UBERON:0012249	50.49	gold quality
stomach	UBERON:0000945	50.28	gold quality
saliva-secreting gland	UBERON:0001044	49.68	gold quality
left ovary	UBERON:0002119	49.44	gold quality
gastrocnemius	UBERON:0001388	49.37	gold quality
muscle of leg	UBERON:0001383	49.28	gold quality
transverse colon	UBERON:0001157	49.20	gold quality
minor salivary gland	UBERON:0001830	49.02	gold quality
left lobe of thyroid gland	UBERON:0001120	48.91	gold quality
prostate gland	UBERON:0002367	48.46	gold quality
tonsil	UBERON:0002372	48.40	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.