LINC01700

Summary

LINC01700 (long intergenic non-protein coding RNA 1700, HGNC:52488) is a long non-coding RNA gene on chromosome 21q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52488
Approved symbol	LINC01700
Name	long intergenic non-protein coding RNA 1700
Location	21q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232837
Ensembl biotype	lncRNA
Entrez	101928435
RNAcentral	URS000075D624 — lncRNA, 1613 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000433952

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000433952 — 3 exons

Exon	Start	End
ENSE00001660496	38974429	38975847
ENSE00001718570	38977711	38977774
ENSE00001801407	38977453	38977567

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 58.31.

Top tissues by expression

198 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
Brodmann (1909) area 9	UBERON:0013540	58.31	gold quality
right frontal lobe	UBERON:0002810	57.78	gold quality
Brodmann (1909) area 23	UBERON:0013554	57.64	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.61	silver quality
nucleus accumbens	UBERON:0001882	56.31	gold quality
anterior cingulate cortex	UBERON:0009835	56.13	gold quality
mucosa of paranasal sinus	UBERON:0005030	55.97	gold quality
nasal cavity epithelium	UBERON:0005384	55.64	gold quality
middle temporal gyrus	UBERON:0002771	55.58	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	55.31	gold quality
hypothalamus	UBERON:0001898	55.00	gold quality
mucosa of transverse colon	UBERON:0004991	54.50	gold quality
saphenous vein	UBERON:0007318	54.45	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	54.41	gold quality
primary visual cortex	UBERON:0002436	54.40	gold quality
endothelial cell	CL:0000115	54.03	gold quality
cardia of stomach	UBERON:0001162	53.79	gold quality
occipital lobe	UBERON:0002021	53.53	gold quality
neocortex	UBERON:0001950	53.45	gold quality
caudate nucleus	UBERON:0001873	53.14	gold quality
putamen	UBERON:0001874	53.07	gold quality
cerebral cortex	UBERON:0000956	52.64	gold quality
frontal cortex	UBERON:0001870	52.63	gold quality
spleen	UBERON:0002106	52.56	gold quality
forebrain	UBERON:0001890	52.47	gold quality
inferior vagus X ganglion	UBERON:0005363	52.47	gold quality
prefrontal cortex	UBERON:0000451	52.41	gold quality
amygdala	UBERON:0001876	52.41	gold quality
body of tongue	UBERON:0011876	52.31	gold quality
pharyngeal mucosa	UBERON:0000355	52.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.