LINC01702

Summary

LINC01702 (long intergenic non-protein coding RNA 1702, HGNC:52490) is a long non-coding RNA gene on chromosome 1p31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52490
Approved symbol	LINC01702
Name	long intergenic non-protein coding RNA 1702
Location	1p31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235200
Ensembl biotype	lncRNA
Entrez	102724481
RNAcentral	URS0002A6DEC5 — lncRNA, 872 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 33 — 33 lncRNA

ENST00000230113, ENST00000634424, ENST00000635350, ENST00000655752, ENST00000657338, ENST00000657691, ENST00000664968, ENST00000667745, ENST00000703039, ENST00000703070, ENST00000751501, ENST00000751502, ENST00000751503, ENST00000751504, ENST00000751505, ENST00000751506, ENST00000751507, ENST00000751508, ENST00000751509, ENST00000751510, ENST00000751511, ENST00000751512, ENST00000751513, ENST00000751514, ENST00000751515, ENST00000751516, ENST00000751517, ENST00000751518, ENST00000751519, ENST00000751520, ENST00000751521, ENST00000751522, ENST00000751523

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000230113 — 5 exons

Exon	Start	End
ENSE00001794839	67530315	67530378
ENSE00003787271	67529653	67529749
ENSE00003788655	67527378	67527437
ENSE00003875968	67522299	67522398
ENSE00003880132	67532106	67532334

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 94.68.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0276 / max 14.5272, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
3410	0.0276	9

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	94.68	gold quality
liver	UBERON:0002107	91.16	gold quality
muscle tissue	UBERON:0002385	83.24	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.20	gold quality
adult mammalian kidney	UBERON:0000082	79.36	gold quality
kidney	UBERON:0002113	75.34	gold quality
sural nerve	UBERON:0015488	65.23	gold quality
cortex of kidney	UBERON:0001225	59.87	gold quality
blood	UBERON:0000178	55.55	gold quality
gall bladder	UBERON:0002110	55.21	gold quality
placenta	UBERON:0001987	55.13	gold quality
leukocyte	CL:0000738	55.09	gold quality
metanephros cortex	UBERON:0010533	54.76	gold quality
monocyte	CL:0000576	54.63	gold quality
apex of heart	UBERON:0002098	52.04	gold quality
duodenum	UBERON:0002114	51.98	gold quality
lymph node	UBERON:0000029	51.87	gold quality
stromal cell of endometrium	CL:0002255	51.47	silver quality
bone marrow	UBERON:0002371	51.19	silver quality
superior frontal gyrus	UBERON:0002661	48.85	silver quality
adrenal tissue	UBERON:0018303	48.78	gold quality
multicellular organism	UBERON:0000468	48.69	gold quality
vermiform appendix	UBERON:0001154	48.63	gold quality
prefrontal cortex	UBERON:0000451	48.57	gold quality
muscle of leg	UBERON:0001383	47.65	gold quality
gastrocnemius	UBERON:0001388	47.39	gold quality
right atrium auricular region	UBERON:0006631	47.23	gold quality
right adrenal gland cortex	UBERON:0035827	46.26	gold quality
heart	UBERON:0000948	46.02	gold quality
endometrium	UBERON:0001295	45.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.