LINC01704

Summary

LINC01704 (long intergenic non-protein coding RNA 1704, HGNC:52492) is a long non-coding RNA gene on chromosome 1q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52492
Approved symbol	LINC01704
Name	long intergenic non-protein coding RNA 1704
Location	1q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231666
Ensembl biotype	lncRNA
Entrez	646268
RNAcentral	URS000075ACC9 — lncRNA, 843 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000414848, ENST00000442358, ENST00000635685, ENST00000654630, ENST00000655195, ENST00000656134, ENST00000656498, ENST00000658278, ENST00000663787, ENST00000665549, ENST00000666137, ENST00000670135, ENST00000820028, ENST00000820029, ENST00000820030

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414848 — 3 exons

Exon	Start	End
ENSE00001714231	158140498	158140657
ENSE00001772816	158133115	158133193
ENSE00003789715	158132040	158132656

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 86.29.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0451 / max 16.8100, expressed in 19 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
15296	0.0451	19

Top tissues by expression

200 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.29	gold quality
buccal mucosa cell	CL:0002336	74.68	silver quality
left testis	UBERON:0004533	72.92	gold quality
right testis	UBERON:0004534	71.90	gold quality
testis	UBERON:0000473	70.45	gold quality
myocardium	UBERON:0002349	59.01	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.83	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.40	gold quality
lower lobe of lung	UBERON:0008949	56.43	silver quality
skin of hip	UBERON:0001554	56.37	silver quality
endothelial cell	CL:0000115	54.50	gold quality
mammary duct	UBERON:0001765	53.63	gold quality
sperm	CL:0000019	52.49	silver quality
smooth muscle tissue	UBERON:0001135	52.38	gold quality
heart right ventricle	UBERON:0002080	52.35	gold quality
gall bladder	UBERON:0002110	51.76	gold quality
monocyte	CL:0000576	51.53	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.50	gold quality
heart left ventricle	UBERON:0002084	51.39	gold quality
omental fat pad	UBERON:0010414	51.31	gold quality
peritoneum	UBERON:0002358	51.27	gold quality
cardiac ventricle	UBERON:0002082	51.24	gold quality
decidua	UBERON:0002450	51.00	gold quality
nasal cavity epithelium	UBERON:0005384	50.93	gold quality
upper leg skin	UBERON:0004262	50.72	silver quality
adipose tissue of abdominal region	UBERON:0007808	50.68	gold quality
apex of heart	UBERON:0002098	50.58	gold quality
muscle of leg	UBERON:0001383	50.37	gold quality
lymph node	UBERON:0000029	50.36	gold quality
oocyte	CL:0000023	50.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.