LINC01707

Summary

LINC01707 (long intergenic non-protein coding RNA 1707, HGNC:52495) is a long non-coding RNA gene on chromosome 1p31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52495
Approved symbol	LINC01707
Name	long intergenic non-protein coding RNA 1707
Location	1p31.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223883
Ensembl biotype	lncRNA
Entrez	105378785
RNAcentral	URS0000BC465A — lncRNA, 639 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000425517, ENST00000658427, ENST00000660251, ENST00000661832, ENST00000664718, ENST00000667299, ENST00000667473, ENST00000777995, ENST00000777996, ENST00000826207

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425517 — 5 exons

Exon	Start	End
ENSE00001616266	69182770	69182861
ENSE00001649089	69055898	69056047
ENSE00001707043	69088515	69088562
ENSE00001709562	69085180	69085298
ENSE00001781852	69184786	69185003

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 82.05.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0249 / max 43.1220, expressed in 1 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
3436	0.0249	1

Top tissues by expression

97 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.05	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.12	gold quality
ventricular zone	UBERON:0003053	62.08	gold quality
sural nerve	UBERON:0015488	59.40	silver quality
testis	UBERON:0000473	58.98	gold quality
right testis	UBERON:0004534	58.44	gold quality
left testis	UBERON:0004533	57.54	gold quality
bone marrow	UBERON:0002371	54.40	gold quality
blood	UBERON:0000178	53.39	silver quality
hindlimb stylopod muscle	UBERON:0004252	53.29	silver quality
lymph node	UBERON:0000029	52.14	gold quality
right frontal lobe	UBERON:0002810	50.84	gold quality
prefrontal cortex	UBERON:0000451	50.81	gold quality
monocyte	CL:0000576	50.68	silver quality
frontal cortex	UBERON:0001870	49.44	gold quality
adrenal tissue	UBERON:0018303	49.20	silver quality
duodenum	UBERON:0002114	48.54	gold quality
urinary bladder	UBERON:0001255	47.93	gold quality
superior frontal gyrus	UBERON:0002661	47.63	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	47.47	gold quality
multicellular organism	UBERON:0000468	47.40	gold quality
islet of Langerhans	UBERON:0000006	47.02	silver quality
placenta	UBERON:0001987	46.81	silver quality
muscle layer of sigmoid colon	UBERON:0035805	46.69	gold quality
gastrocnemius	UBERON:0001388	46.63	gold quality
liver	UBERON:0002107	45.75	silver quality
cortex of kidney	UBERON:0001225	45.23	gold quality
heart left ventricle	UBERON:0002084	45.16	gold quality
tibial artery	UBERON:0007610	45.08	silver quality
heart	UBERON:0000948	45.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.