LINC01708

Summary

LINC01708 (long intergenic non-protein coding RNA 1708, HGNC:52496) is a long non-coding RNA gene on chromosome 1p21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52496
Approved symbol	LINC01708
Name	long intergenic non-protein coding RNA 1708
Location	1p21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224445
Ensembl biotype	lncRNA
Entrez	101928270
RNAcentral	URS00007E3DB7 — lncRNA, 414 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000438829, ENST00000634316, ENST00000635551, ENST00000827173, ENST00000827174, ENST00000827175, ENST00000827176

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000438829 — 4 exons

Exon	Start	End
ENSE00001612962	99472415	99472649
ENSE00001628512	99487745	99487804
ENSE00001665927	99533993	99534015
ENSE00001728754	99480114	99480237

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 69.93.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0268 / max 9.4184, expressed in 13 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
13492	0.0268	13

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	69.93	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.52	gold quality
fallopian tube	UBERON:0003889	61.05	gold quality
calcaneal tendon	UBERON:0003701	59.43	gold quality
urinary bladder	UBERON:0001255	58.42	gold quality
monocyte	CL:0000576	56.72	gold quality
endometrium	UBERON:0001295	56.33	gold quality
blood	UBERON:0000178	54.92	gold quality
liver	UBERON:0002107	54.34	gold quality
adrenal tissue	UBERON:0018303	54.19	gold quality
vermiform appendix	UBERON:0001154	52.83	gold quality
right lobe of liver	UBERON:0001114	52.26	gold quality
prefrontal cortex	UBERON:0000451	51.86	gold quality
islet of Langerhans	UBERON:0000006	51.71	gold quality
placenta	UBERON:0001987	50.44	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	50.43	gold quality
myometrium	UBERON:0001296	50.23	gold quality
gastrocnemius	UBERON:0001388	50.18	gold quality
heart left ventricle	UBERON:0002084	48.51	gold quality
heart	UBERON:0000948	48.26	gold quality
lung	UBERON:0002048	47.80	gold quality
left adrenal gland cortex	UBERON:0035825	46.80	gold quality
gall bladder	UBERON:0002110	46.55	gold quality
left adrenal gland	UBERON:0001234	46.05	gold quality
adenohypophysis	UBERON:0002196	45.87	gold quality
caudate nucleus	UBERON:0001873	45.72	gold quality
thoracic mammary gland	UBERON:0005200	45.69	gold quality
body of uterus	UBERON:0009853	45.68	gold quality
right atrium auricular region	UBERON:0006631	45.65	gold quality
hypothalamus	UBERON:0001898	45.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.