LINC01709

Summary

LINC01709 (long intergenic non-protein coding RNA 1709, HGNC:52497) is a long non-coding RNA gene on chromosome 1p21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52497
Approved symbol	LINC01709
Name	long intergenic non-protein coding RNA 1709
Location	1p21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226715
Ensembl biotype	lncRNA
Entrez	105378872
RNAcentral	URS0000EEBD20 — lncRNA, 696 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000415532, ENST00000635702, ENST00000648951, ENST00000655157, ENST00000656484, ENST00000657394, ENST00000660911, ENST00000662434, ENST00000663157, ENST00000664322, ENST00000665036, ENST00000666574, ENST00000668955, ENST00000669180, ENST00000771206, ENST00000771207, ENST00000771208, ENST00000771209, ENST00000771210

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415532 — 3 exons

Exon	Start	End
ENSE00001595993	101723742	101723875
ENSE00001745911	101729271	101729614
ENSE00004133996	101639530	101639703

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 87.48.

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ganglionic eminence	UBERON:0004023	87.48	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.39	gold quality
stromal cell of endometrium	CL:0002255	83.48	gold quality
cortical plate	UBERON:0005343	83.07	gold quality
vermiform appendix	UBERON:0001154	81.86	gold quality
skeletal muscle tissue	UBERON:0001134	80.44	gold quality
ventricular zone	UBERON:0003053	78.62	gold quality
hindlimb stylopod muscle	UBERON:0004252	78.25	gold quality
lymph node	UBERON:0000029	77.80	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.32	gold quality
duodenum	UBERON:0002114	74.48	gold quality
left ovary	UBERON:0002119	73.04	gold quality
ovary	UBERON:0000992	72.60	gold quality
lower esophagus mucosa	UBERON:0035834	72.18	gold quality
primary visual cortex	UBERON:0002436	71.94	gold quality
muscle tissue	UBERON:0002385	71.64	gold quality
blood	UBERON:0000178	71.55	gold quality
body of pancreas	UBERON:0001150	71.17	gold quality
left coronary artery	UBERON:0001626	70.89	gold quality
muscle of leg	UBERON:0001383	70.76	gold quality
calcaneal tendon	UBERON:0003701	70.67	gold quality
gastrocnemius	UBERON:0001388	70.39	gold quality
mucosa of transverse colon	UBERON:0004991	70.14	gold quality
pancreas	UBERON:0001264	70.03	gold quality
body of uterus	UBERON:0009853	69.89	gold quality
right ovary	UBERON:0002118	69.67	gold quality
tonsil	UBERON:0002372	69.60	gold quality
bone marrow	UBERON:0002371	69.41	gold quality
esophagus mucosa	UBERON:0002469	69.18	gold quality
placenta	UBERON:0001987	69.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	9.33

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.