LINC01716

Summary

LINC01716 (long intergenic non-protein coding RNA 1716, HGNC:52503) is a long non-coding RNA gene on chromosome 20q13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52503
Approved symbol	LINC01716
Name	long intergenic non-protein coding RNA 1716
Location	20q13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225657
Ensembl biotype	lncRNA
Entrez	105372682
RNAcentral	URS0000355371 — lncRNA, 698 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000434176, ENST00000437350, ENST00000800844, ENST00000800845, ENST00000800846, ENST00000800847, ENST00000800848, ENST00000800849, ENST00000800850, ENST00000800851

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434176 — 6 exons

Exon	Start	End
ENSE00001648863	56577563	56577612
ENSE00001676783	56577742	56577950
ENSE00001680102	56596054	56596126
ENSE00001682924	56595063	56595130
ENSE00001777764	56580201	56580335
ENSE00001786263	56579391	56579553

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 80.41.

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.41	gold quality
calcaneal tendon	UBERON:0003701	65.74	gold quality
lymph node	UBERON:0000029	63.54	gold quality
sural nerve	UBERON:0015488	62.47	gold quality
islet of Langerhans	UBERON:0000006	62.40	gold quality
mucosa of transverse colon	UBERON:0004991	62.38	gold quality
prefrontal cortex	UBERON:0000451	62.30	gold quality
monocyte	CL:0000576	61.77	gold quality
duodenum	UBERON:0002114	60.75	gold quality
gall bladder	UBERON:0002110	60.69	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.50	gold quality
blood	UBERON:0000178	59.40	gold quality
ectocervix	UBERON:0012249	57.65	gold quality
liver	UBERON:0002107	56.19	gold quality
adrenal tissue	UBERON:0018303	55.76	gold quality
endocervix	UBERON:0000458	55.49	gold quality
right lobe of liver	UBERON:0001114	55.18	gold quality
popliteal artery	UBERON:0002250	54.76	gold quality
tibial artery	UBERON:0007610	54.64	gold quality
pancreas	UBERON:0001264	54.54	gold quality
kidney	UBERON:0002113	54.30	gold quality
endometrium	UBERON:0001295	53.90	gold quality
gastrocnemius	UBERON:0001388	53.88	gold quality
right lobe of thyroid gland	UBERON:0001119	53.86	gold quality
vagina	UBERON:0000996	53.85	gold quality
minor salivary gland	UBERON:0001830	53.71	gold quality
adult mammalian kidney	UBERON:0000082	53.67	gold quality
esophagus mucosa	UBERON:0002469	53.17	gold quality
body of stomach	UBERON:0001161	53.09	gold quality
stomach	UBERON:0000945	53.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.