LINC01717

Summary

LINC01717 (long intergenic non-protein coding RNA 1717, HGNC:52504) is a long non-coding RNA gene on chromosome 1q32.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52504
Approved symbol	LINC01717
Name	long intergenic non-protein coding RNA 1717
Location	1q32.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232812
Ensembl biotype	lncRNA
Entrez	105372893
RNAcentral	URS0000266780 — lncRNA, 527 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000415754, ENST00000660747, ENST00000661534, ENST00000666184, ENST00000671344, ENST00000722533, ENST00000722534, ENST00000722535, ENST00000722536

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415754 — 4 exons

Exon	Start	End
ENSE00001592791	208729818	208730075
ENSE00001623224	208729143	208729277
ENSE00001641115	208733098	208733184
ENSE00004043252	208728665	208728734

Expression profiles

Bgee: expression breadth broad, 74 present calls, max score 78.00.

Top tissues by expression

74 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	78.00	gold quality
left testis	UBERON:0004533	67.93	gold quality
testis	UBERON:0000473	67.77	gold quality
ganglionic eminence	UBERON:0004023	66.67	gold quality
right testis	UBERON:0004534	66.39	gold quality
cortical plate	UBERON:0005343	62.50	gold quality
tonsil	UBERON:0002372	61.66	silver quality
ventricular zone	UBERON:0003053	60.71	gold quality
multicellular organism	UBERON:0000468	53.51	gold quality
monocyte	CL:0000576	53.18	silver quality
placenta	UBERON:0001987	53.14	gold quality
blood	UBERON:0000178	51.99	silver quality
liver	UBERON:0002107	51.90	gold quality
adrenal tissue	UBERON:0018303	51.32	gold quality
prefrontal cortex	UBERON:0000451	50.57	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	50.38	silver quality
islet of Langerhans	UBERON:0000006	50.31	gold quality
right lobe of liver	UBERON:0001114	50.24	gold quality
gastrocnemius	UBERON:0001388	48.65	gold quality
Brodmann (1909) area 9	UBERON:0013540	48.24	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.63	gold quality
skin of abdomen	UBERON:0001416	46.64	gold quality
body of stomach	UBERON:0001161	45.90	gold quality
primary visual cortex	UBERON:0002436	45.08	silver quality
heart	UBERON:0000948	44.94	silver quality
stomach	UBERON:0000945	44.33	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	44.17	silver quality
heart left ventricle	UBERON:0002084	43.95	silver quality
colon	UBERON:0001155	43.87	silver quality
intestine	UBERON:0000160	43.85	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.