LINC01718

Summary

LINC01718 (long intergenic non-protein coding RNA 1718, HGNC:52505) is a long non-coding RNA gene on chromosome 20q13.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52505
Approved symbol	LINC01718
Name	long intergenic non-protein coding RNA 1718
Location	20q13.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229606
Ensembl biotype	lncRNA
Entrez	100506470
RNAcentral	URS000075BFD7 — lncRNA, 481 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000441660, ENST00000664708, ENST00000770461, ENST00000770462, ENST00000770463, ENST00000770464

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000441660 — 2 exons

Exon	Start	End
ENSE00001718198	61079980	61080179
ENSE00004132547	61079049	61079330

Expression profiles

Bgee: expression breadth broad, 48 present calls, max score 96.83.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0468 / max 54.5813, expressed in 3 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
185684	0.0283	3
185686	0.0141	3
185685	0.0045	3

Top tissues by expression

157 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.83	gold quality
islet of Langerhans	UBERON:0000006	86.27	gold quality
nasal cavity epithelium	UBERON:0005384	81.37	gold quality
left testis	UBERON:0004533	81.34	gold quality
right testis	UBERON:0004534	79.11	gold quality
cerebellar vermis	UBERON:0004720	78.55	gold quality
kidney epithelium	UBERON:0004819	78.29	gold quality
testis	UBERON:0000473	78.27	gold quality
upper arm skin	UBERON:0004263	78.16	gold quality
vena cava	UBERON:0004087	77.73	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	75.50	gold quality
epithelial cell of pancreas	CL:0000083	75.25	gold quality
sperm	CL:0000019	75.16	gold quality
pancreatic ductal cell	CL:0002079	73.83	silver quality
skeletal muscle tissue	UBERON:0001134	73.25	gold quality
pharyngeal mucosa	UBERON:0000355	73.02	gold quality
sural nerve	UBERON:0015488	72.49	gold quality
saliva-secreting gland	UBERON:0001044	72.24	gold quality
cardiac atrium	UBERON:0002081	71.88	gold quality
bone marrow	UBERON:0002371	71.29	gold quality
parotid gland	UBERON:0001831	71.24	gold quality
quadriceps femoris	UBERON:0001377	71.00	gold quality
pericardium	UBERON:0002407	70.93	silver quality
cardiac muscle of right atrium	UBERON:0003379	70.90	gold quality
tongue	UBERON:0001723	70.87	gold quality
trachea	UBERON:0003126	70.84	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	70.81	gold quality
pylorus	UBERON:0001166	70.80	silver quality
left ventricle myocardium	UBERON:0006566	70.75	gold quality
lateral nuclear group of thalamus	UBERON:0002736	70.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.