LINC01719

Summary

LINC01719 (long intergenic non-protein coding RNA 1719, HGNC:52506) is a long non-coding RNA gene on chromosome 1q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52506
Approved symbol	LINC01719
Name	long intergenic non-protein coding RNA 1719
Location	1q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233396
Ensembl biotype	lncRNA
Entrez	101928979
RNAcentral	URS00007E3AAF — lncRNA, 1039 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000452883, ENST00000457465, ENST00000610820, ENST00000611275, ENST00000612371, ENST00000619720, ENST00000664959, ENST00000667400, ENST00000667626, ENST00000778988, ENST00000778989

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000452883 — 3 exons

Exon	Start	End
ENSE00001677699	146058558	146058838
ENSE00001732700	146057233	146057304
ENSE00001772158	146057694	146057988

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 91.64.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.4043 / max 73.1736, expressed in 1321 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
4968	2.7091	1084
4967	1.6951	603

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
gastrocnemius	UBERON:0001388	91.64	gold quality
muscle of leg	UBERON:0001383	90.83	gold quality
hindlimb stylopod muscle	UBERON:0004252	90.73	gold quality
skeletal muscle tissue	UBERON:0001134	89.42	gold quality
apex of heart	UBERON:0002098	89.29	gold quality
right hemisphere of cerebellum	UBERON:0014890	87.43	gold quality
cerebellar cortex	UBERON:0002129	87.32	gold quality
cerebellar hemisphere	UBERON:0002245	87.24	gold quality
cerebellum	UBERON:0002037	87.17	gold quality
heart left ventricle	UBERON:0002084	86.86	gold quality
right atrium auricular region	UBERON:0006631	84.62	gold quality
heart	UBERON:0000948	84.50	gold quality
muscle tissue	UBERON:0002385	83.83	gold quality
cortical plate	UBERON:0005343	80.49	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.95	gold quality
mucosa of stomach	UBERON:0001199	79.32	gold quality
tibial artery	UBERON:0007610	79.22	gold quality
popliteal artery	UBERON:0002250	79.21	gold quality
tibial nerve	UBERON:0001323	78.89	gold quality
superior frontal gyrus	UBERON:0002661	78.30	gold quality
left coronary artery	UBERON:0001626	77.94	gold quality
ascending aorta	UBERON:0001496	77.84	gold quality
thoracic aorta	UBERON:0001515	77.73	gold quality
sural nerve	UBERON:0015488	77.50	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	77.29	gold quality
descending thoracic aorta	UBERON:0002345	76.51	gold quality
right lobe of liver	UBERON:0001114	76.50	gold quality
right coronary artery	UBERON:0001625	76.42	gold quality
primary visual cortex	UBERON:0002436	76.39	gold quality
brain	UBERON:0000955	76.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.