LINC01720

Summary

LINC01720 (long intergenic non-protein coding RNA 1720, HGNC:52507) is a long non-coding RNA gene on chromosome 1q31.1-q31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52507
Approved symbol	LINC01720
Name	long intergenic non-protein coding RNA 1720
Location	1q31.1-q31.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231175
Ensembl biotype	lncRNA
Entrez	440704
RNAcentral	URS0000042BC0 — lncRNA, 2216 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000413356

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413356 — 5 exons

Exon	Start	End
ENSE00001719228	190738438	190738510
ENSE00001727884	190799801	190801658
ENSE00001775305	190791514	190791563
ENSE00001777951	190624890	190625033
ENSE00001794104	190793506	190793596

Expression profiles

Bgee: expression breadth broad, 24 present calls, max score 49.64.

Top tissues by expression

152 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
upper lobe of lung	UBERON:0008948	49.64	silver quality
lower lobe of lung	UBERON:0008949	49.35	silver quality
upper leg skin	UBERON:0004262	44.95	silver quality
gastrocnemius	UBERON:0001388	44.70	silver quality
adult mammalian kidney	UBERON:0000082	44.39	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
body of pancreas	UBERON:0001150	43.14	silver quality
lung	UBERON:0002048	43.02	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
buccal mucosa cell	CL:0002336	42.49	gold quality
left ovary	UBERON:0002119	41.85	silver quality
oviduct epithelium	UBERON:0004804	41.49	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
prefrontal cortex	UBERON:0000451	41.35	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
kidney	UBERON:0002113	41.13	silver quality
skeletal muscle tissue	UBERON:0001134	41.10	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
fallopian tube	UBERON:0003889	41.05	gold quality
mucosa of paranasal sinus	UBERON:0005030	40.98	gold quality
amniotic fluid	UBERON:0000173	40.69	gold quality
left adrenal gland cortex	UBERON:0035825	40.69	silver quality
nasal cavity mucosa	UBERON:0001826	40.63	gold quality
endometrium	UBERON:0001295	40.60	gold quality
jejunal mucosa	UBERON:0000399	40.59	gold quality
biceps brachii	UBERON:0001507	40.57	gold quality
epithelium of nasopharynx	UBERON:0001951	40.45	gold quality
myocardium	UBERON:0002349	40.45	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.