LINC01724

Summary

LINC01724 (long intergenic non-protein coding RNA 1724, HGNC:52512) is a long non-coding RNA gene on chromosome 1q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52512
Approved symbol	LINC01724
Name	long intergenic non-protein coding RNA 1724
Location	1q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227421
Ensembl biotype	lncRNA
Entrez	105371673
RNAcentral	URS0000BC4644 — lncRNA, 1176 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000430519, ENST00000838209, ENST00000838211, ENST00000838213, ENST00000838214, ENST00000838215, ENST00000838216, ENST00000838217, ENST00000838218, ENST00000838219, ENST00000838220, ENST00000838221, ENST00000838222

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430519 — 4 exons

Exon	Start	End
ENSE00001746900	196060997	196061179
ENSE00003866533	196063169	196063288
ENSE00004259416	196065102	196065238
ENSE00004259428	196044880	196045539

Expression profiles

Bgee: expression breadth broad, 46 present calls, max score 90.04.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0572 / max 43.0711, expressed in 8 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
16472	0.0572	8

Top tissues by expression

46 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.04	gold quality
liver	UBERON:0002107	60.30	gold quality
lymph node	UBERON:0000029	59.37	gold quality
leukocyte	CL:0000738	56.37	gold quality
monocyte	CL:0000576	56.35	gold quality
urinary bladder	UBERON:0001255	54.10	gold quality
endometrium	UBERON:0001295	52.08	gold quality
tonsil	UBERON:0002372	51.20	gold quality
vermiform appendix	UBERON:0001154	49.33	gold quality
prefrontal cortex	UBERON:0000451	48.77	silver quality
blood	UBERON:0000178	48.39	gold quality
Ammon’s horn	UBERON:0001954	48.01	silver quality
gall bladder	UBERON:0002110	47.80	gold quality
caudate nucleus	UBERON:0001873	47.36	gold quality
muscle of leg	UBERON:0001383	47.20	silver quality
gastrocnemius	UBERON:0001388	44.56	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.52	silver quality
lung	UBERON:0002048	44.18	gold quality
small intestine	UBERON:0002108	43.94	gold quality
tibial artery	UBERON:0007610	43.43	silver quality
thyroid gland	UBERON:0002046	43.41	silver quality
superior frontal gyrus	UBERON:0002661	43.33	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	43.22	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	43.19	silver quality
heart	UBERON:0000948	43.03	gold quality
ascending aorta	UBERON:0001496	42.96	silver quality
esophagus	UBERON:0001043	42.51	silver quality
zone of skin	UBERON:0000014	42.33	gold quality
lower esophagus muscularis layer	UBERON:0035833	41.87	silver quality
spleen	UBERON:0002106	41.43	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.