LINC01725

Summary

LINC01725 (long intergenic non-protein coding RNA 1725, HGNC:52513) is a long non-coding RNA gene on chromosome 1p31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52513
Approved symbol	LINC01725
Name	long intergenic non-protein coding RNA 1725
Location	1p31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233008
Ensembl biotype	lncRNA
Entrez	101927587
RNAcentral	URS00007599AD — lncRNA, 3166 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 94 — 94 lncRNA

ENST00000413975, ENST00000417565, ENST00000417975, ENST00000419733, ENST00000457273, ENST00000647626, ENST00000657125, ENST00000662803, ENST00000670031, ENST00000685925, ENST00000688380, ENST00000688565, ENST00000689046, ENST00000689600, ENST00000701060, ENST00000701853, ENST00000701862, ENST00000702837, ENST00000702881, ENST00000715927, ENST00000715928, ENST00000715929, ENST00000715930, ENST00000715931, ENST00000715932, ENST00000715933, ENST00000715934, ENST00000715935, ENST00000715936, ENST00000715937, ENST00000715938, ENST00000715939, ENST00000715940, ENST00000715963, ENST00000715964, ENST00000715965, ENST00000715966, ENST00000715967, ENST00000715968, ENST00000715969, ENST00000715970, ENST00000715971, ENST00000715972, ENST00000715973, ENST00000793990, ENST00000793991, ENST00000793992, ENST00000793993, ENST00000793994, ENST00000793995, ENST00000793996, ENST00000793997, ENST00000793998, ENST00000793999, ENST00000794000, ENST00000794001, ENST00000794002, ENST00000794003, ENST00000794004, ENST00000794005, ENST00000794006, ENST00000794007, ENST00000794008, ENST00000794009, ENST00000794010, ENST00000794011, ENST00000794012, ENST00000794013, ENST00000794014, ENST00000794015, ENST00000794016, ENST00000794017, ENST00000794018, ENST00000794019, ENST00000794020, ENST00000794021, ENST00000794022, ENST00000794023, ENST00000794024, ENST00000794025, ENST00000794026, ENST00000794027, ENST00000794028, ENST00000794029, ENST00000794030, ENST00000794031, ENST00000794032, ENST00000794033, ENST00000794034, ENST00000794035, ENST00000847100, ENST00000847101, ENST00000847102, ENST00000847103

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413975 — 2 exons

Exon	Start	End
ENSE00003986271	83860819	83861031
ENSE00004177468	83831618	83831850

Expression profiles

Bgee: expression breadth ubiquitous, 147 present calls, max score 75.67.

FANTOM5 (CAGE): breadth broad, TPM avg 0.9140 / max 43.7552, expressed in 351 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
12965	0.8851	345
12964	0.0234	3
12963	0.0055	3

Top tissues by expression

231 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.67	silver quality
left testis	UBERON:0004533	73.94	gold quality
right testis	UBERON:0004534	72.48	gold quality
right lobe of liver	UBERON:0001114	71.67	gold quality
testis	UBERON:0000473	71.39	gold quality
bone marrow cell	CL:0002092	69.28	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.18	gold quality
islet of Langerhans	UBERON:0000006	68.05	gold quality
colonic epithelium	UBERON:0000397	65.85	silver quality
left lobe of thyroid gland	UBERON:0001120	65.51	gold quality
pancreas	UBERON:0001264	65.20	gold quality
thyroid gland	UBERON:0002046	65.12	gold quality
liver	UBERON:0002107	64.29	gold quality
body of pancreas	UBERON:0001150	64.01	gold quality
ventricular zone	UBERON:0003053	62.76	gold quality
right atrium auricular region	UBERON:0006631	61.93	gold quality
right lobe of thyroid gland	UBERON:0001119	61.84	gold quality
cardiac atrium	UBERON:0002081	61.36	gold quality
tendon of biceps brachii	UBERON:0008188	60.84	gold quality
ganglionic eminence	UBERON:0004023	60.41	gold quality
adenohypophysis	UBERON:0002196	60.06	gold quality
minor salivary gland	UBERON:0001830	59.44	gold quality
corpus epididymis	UBERON:0004359	59.22	silver quality
heart left ventricle	UBERON:0002084	58.81	gold quality
ascending aorta	UBERON:0001496	58.77	gold quality
thoracic aorta	UBERON:0001515	58.52	gold quality
tonsil	UBERON:0002372	58.32	gold quality
heart	UBERON:0000948	58.26	gold quality
cardiac ventricle	UBERON:0002082	58.14	gold quality
prostate gland	UBERON:0002367	58.06	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.87

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.