LINC01726

Summary

LINC01726 (long intergenic non-protein coding RNA 1726, HGNC:52514) is a long non-coding RNA gene on chromosome 20p11.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52514
Approved symbol	LINC01726
Name	long intergenic non-protein coding RNA 1726
Location	20p11.22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000280350
Ensembl biotype	lncRNA
Entrez	101929608
RNAcentral	URS000075BD27 — lncRNA, 1253 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000624692, ENST00000750219

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000624692 — 5 exons

Exon	Start	End
ENSE00003756439	21612352	21612677
ENSE00003756837	21627349	21627442
ENSE00003758764	21626343	21626426
ENSE00003758980	21610787	21611271
ENSE00003759828	21703322	21703585

Expression profiles

Bgee: expression breadth broad, 60 present calls, max score 83.44.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0031 / max 3.0796, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186622	0.0031	2

Top tissues by expression

60 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortex of kidney	UBERON:0001225	83.44	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.49	silver quality
tonsil	UBERON:0002372	68.96	gold quality
right lobe of liver	UBERON:0001114	56.07	gold quality
liver	UBERON:0002107	55.33	gold quality
right hemisphere of cerebellum	UBERON:0014890	52.35	gold quality
adrenal gland	UBERON:0002369	52.26	gold quality
prefrontal cortex	UBERON:0000451	52.03	gold quality
stromal cell of endometrium	CL:0002255	51.92	silver quality
cerebellum	UBERON:0002037	51.28	gold quality
cerebellar cortex	UBERON:0002129	51.23	gold quality
cerebellar hemisphere	UBERON:0002245	51.20	gold quality
lymph node	UBERON:0000029	50.53	silver quality
urinary bladder	UBERON:0001255	50.40	gold quality
vermiform appendix	UBERON:0001154	50.11	gold quality
gastrocnemius	UBERON:0001388	50.06	gold quality
endometrium	UBERON:0001295	49.75	silver quality
blood	UBERON:0000178	49.28	gold quality
frontal cortex	UBERON:0001870	48.83	gold quality
primary visual cortex	UBERON:0002436	48.63	silver quality
islet of Langerhans	UBERON:0000006	48.52	silver quality
placenta	UBERON:0001987	48.19	silver quality
monocyte	CL:0000576	48.12	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	48.06	gold quality
cerebral cortex	UBERON:0000956	47.98	gold quality
brain	UBERON:0000955	47.91	gold quality
multicellular organism	UBERON:0000468	47.87	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.47	gold quality
superior frontal gyrus	UBERON:0002661	47.44	silver quality
anterior cingulate cortex	UBERON:0009835	46.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.