LINC01739

Summary

LINC01739 (long intergenic non-protein coding RNA 1739, HGNC:52527) is a long non-coding RNA gene on chromosome 1p31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52527
Approved symbol	LINC01739
Name	long intergenic non-protein coding RNA 1739
Location	1p31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229537
Ensembl biotype	lncRNA
Entrez	105378769
RNAcentral	URS0000BC45BD — lncRNA, 507 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000420285, ENST00000420659, ENST00000425352, ENST00000641712, ENST00000641890, ENST00000748522, ENST00000748523, ENST00000748524, ENST00000748525, ENST00000748526, ENST00000748527, ENST00000748528, ENST00000748529, ENST00000748530, ENST00000748531, ENST00000748532, ENST00000748533, ENST00000748534, ENST00000748535, ENST00000748536, ENST00000748537, ENST00000748538, ENST00000748539

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420285 — 3 exons

Exon	Start	End
ENSE00001709224	63010878	63010987
ENSE00001778535	63000497	63000803
ENSE00003886446	63011086	63011115

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 92.61.

Top tissues by expression

62 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.61	gold quality
adult mammalian kidney	UBERON:0000082	64.55	gold quality
kidney	UBERON:0002113	62.61	gold quality
right testis	UBERON:0004534	60.23	gold quality
left testis	UBERON:0004533	58.68	gold quality
right hemisphere of cerebellum	UBERON:0014890	58.61	gold quality
testis	UBERON:0000473	58.47	gold quality
prefrontal cortex	UBERON:0000451	58.29	gold quality
monocyte	CL:0000576	55.54	gold quality
amygdala	UBERON:0001876	55.32	gold quality
calcaneal tendon	UBERON:0003701	55.28	gold quality
blood	UBERON:0000178	55.18	gold quality
cerebellar hemisphere	UBERON:0002245	54.60	gold quality
corpus callosum	UBERON:0002336	54.41	gold quality
liver	UBERON:0002107	53.97	gold quality
frontal cortex	UBERON:0001870	53.41	gold quality
anterior cingulate cortex	UBERON:0009835	52.88	gold quality
substantia nigra	UBERON:0002038	52.55	gold quality
cortex of kidney	UBERON:0001225	52.20	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	52.14	gold quality
multicellular organism	UBERON:0000468	52.13	gold quality
cerebral cortex	UBERON:0000956	51.99	gold quality
tibial nerve	UBERON:0001323	51.69	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.36	gold quality
superior frontal gyrus	UBERON:0002661	51.24	gold quality
hypothalamus	UBERON:0001898	51.10	gold quality
brain	UBERON:0000955	51.05	gold quality
gastrocnemius	UBERON:0001388	50.73	gold quality
primary visual cortex	UBERON:0002436	50.33	gold quality
right frontal lobe	UBERON:0002810	50.01	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.59

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.