LINC01740

Summary

LINC01740 (long intergenic non-protein coding RNA 1740, HGNC:52528) is a long non-coding RNA gene on chromosome 1q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52528
Approved symbol	LINC01740
Name	long intergenic non-protein coding RNA 1740
Location	1q32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228067
Ensembl biotype	lncRNA
Entrez	101929565
RNAcentral	URS00007E35EF — lncRNA, 333 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000423842, ENST00000651527, ENST00000850094, ENST00000850095, ENST00000850096, ENST00000850097, ENST00000850098, ENST00000850099, ENST00000850100

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423842 — 4 exons

Exon	Start	End
ENSE00001670266	212554412	212554448
ENSE00001680295	212545694	212545765
ENSE00004281205	212555843	212556085
ENSE00004281207	212467563	212468361

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 82.41.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1214 / max 18.8591, expressed in 44 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
8467	0.1214	44

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.41	gold quality
cortical plate	UBERON:0005343	71.49	gold quality
ganglionic eminence	UBERON:0004023	70.49	gold quality
lymph node	UBERON:0000029	66.51	gold quality
prefrontal cortex	UBERON:0000451	66.09	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.73	gold quality
gall bladder	UBERON:0002110	63.25	gold quality
putamen	UBERON:0001874	62.06	gold quality
monocyte	CL:0000576	61.05	gold quality
bone marrow	UBERON:0002371	60.19	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.90	gold quality
primary visual cortex	UBERON:0002436	59.77	gold quality
cerebellar cortex	UBERON:0002129	59.53	gold quality
cerebellar hemisphere	UBERON:0002245	59.52	gold quality
cerebellum	UBERON:0002037	59.50	gold quality
nucleus accumbens	UBERON:0001882	59.01	gold quality
Brodmann (1909) area 9	UBERON:0013540	58.73	gold quality
caudate nucleus	UBERON:0001873	58.60	gold quality
Ammon’s horn	UBERON:0001954	58.28	gold quality
substantia nigra	UBERON:0002038	57.88	gold quality
amygdala	UBERON:0001876	57.41	gold quality
right hemisphere of cerebellum	UBERON:0014890	57.34	gold quality
islet of Langerhans	UBERON:0000006	57.18	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	57.06	gold quality
brain	UBERON:0000955	57.02	gold quality
superior frontal gyrus	UBERON:0002661	57.02	gold quality
popliteal artery	UBERON:0002250	56.75	gold quality
tibial artery	UBERON:0007610	56.71	gold quality
blood	UBERON:0000178	56.25	gold quality
cerebral cortex	UBERON:0000956	56.11	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.