LINC01741

Summary

LINC01741 (long intergenic non-protein coding RNA 1741, HGNC:52529) is a long non-coding RNA gene on chromosome 1q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52529
Approved symbol	LINC01741
Name	long intergenic non-protein coding RNA 1741
Location	1q25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236720
Ensembl biotype	lncRNA
Entrez	101928778
RNAcentral	URS00003EC394 — lncRNA, 1666 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000427173, ENST00000654430, ENST00000670282, ENST00000811718

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427173 — 4 exons

Exon	Start	End
ENSE00001623677	177700524	177701362
ENSE00001739597	177709789	177710330
ENSE00001748762	177701459	177701574
ENSE00001793093	177708957	177709125

Expression profiles

Bgee: expression breadth broad, 12 present calls, max score 86.60.

Top tissues by expression

169 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.60	gold quality
upper leg skin	UBERON:0004262	64.79	silver quality
gingival epithelium	UBERON:0001949	57.74	gold quality
sperm	CL:0000019	57.19	gold quality
endothelial cell	CL:0000115	57.04	gold quality
gingiva	UBERON:0001828	55.75	gold quality
skin of hip	UBERON:0001554	54.48	silver quality
monocyte	CL:0000576	51.69	silver quality
sural nerve	UBERON:0015488	51.24	silver quality
mouth mucosa	UBERON:0003729	48.90	gold quality
tonsil	UBERON:0002372	47.25	gold quality
blood	UBERON:0000178	46.36	gold quality
saphenous vein	UBERON:0007318	44.46	gold quality
body of stomach	UBERON:0001161	44.06	gold quality
middle temporal gyrus	UBERON:0002771	43.65	gold quality
nucleus accumbens	UBERON:0001882	43.61	gold quality
germinal epithelium of ovary	UBERON:0001304	43.43	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
gastrocnemius	UBERON:0001388	42.96	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
heart	UBERON:0000948	42.31	gold quality
epithelium of nasopharynx	UBERON:0001951	42.02	gold quality
adrenal gland	UBERON:0002369	42.02	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
bone marrow	UBERON:0002371	41.56	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
inferior vagus X ganglion	UBERON:0005363	41.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.